Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 0.0e+00 1291.9 670 100.0
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 6.6e-277 957.2 528 93.9
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.1e-247 860.1 536 84.7
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 6.8e-197 691.4 668 58.7
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.3e-192 677.2 643 59.4
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 3.1e-186 656.0 746 52.3
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.2e-185 654.1 735 52.7
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 2.0e-185 653.3 546 69.2
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 2.3e-184 649.8 553 63.5
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 2.5e-183 646.4 642 56.5
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.6e-182 642.5 552 63.9
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 6.1e-182 641.7 674 54.7
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 4.0e-181 639.0 550 63.6
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.2e-180 637.5 539 63.1
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 5.7e-180 635.2 536 64.2
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 1.3e-179 634.0 550 63.1
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 4.9e-179 632.1 545 63.3
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 4.9e-179 632.1 547 62.9
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 8.3e-179 631.3 351 90.9
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.4e-178 630.6 733 51.3
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.8e-178 630.2 534 63.5
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.8e-178 630.2 595 59.3
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.2e-178 629.4 544 63.1
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 8.6e-176 621.3 665 52.8
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 7.3e-175 618.2 545 61.3
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 1.2e-174 617.5 548 61.5
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 1.8e-173 613.6 535 60.9
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.0e-173 612.5 556 61.0
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 5.2e-173 612.1 585 58.5
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 8.9e-173 611.3 539 60.7
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.2e-172 610.9 545 61.3
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.6e-172 609.8 607 57.0
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 9.8e-172 607.8 534 62.0
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.7e-171 607.1 534 62.0
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 3.7e-171 605.9 547 60.5
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 3.7e-171 605.9 534 61.8
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.7e-169 599.7 577 58.2
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 7.8e-169 598.2 539 60.5
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 1.3e-168 597.4 528 60.8
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 1.3e-168 597.4 576 57.1
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.5e-167 594.0 561 57.4
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 3.3e-167 592.8 533 59.1
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 5.6e-167 592.0 527 60.5
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 1.6e-166 590.5 563 57.9
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 2.8e-166 589.7 549 57.6
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 3.6e-166 589.3 524 61.5
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 8.1e-166 588.2 658 51.1
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 2.3e-165 586.6 589 56.9
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 1.2e-164 584.3 633 51.2
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 2.9e-163 579.7 635 51.7
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 3.7e-163 579.3 581 55.4
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 6.4e-163 578.6 560 56.4
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 1.1e-162 577.8 528 58.9
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 4.1e-162 575.9 560 56.6
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 7.8e-161 571.6 554 56.5
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.1e-159 567.8 530 59.1
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.9e-159 567.0 548 58.6
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 3.3e-159 566.2 547 56.9
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 3.3e-159 566.2 558 56.8
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 9.5e-159 564.7 543 56.9
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 2.8e-158 563.1 557 56.0
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 8.1e-158 561.6 527 57.1
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 1.1e-157 561.2 550 56.2
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 6.8e-157 558.5 583 54.7
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 2.6e-156 556.6 522 57.1
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 2.6e-156 556.6 593 52.3
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 3.4e-156 556.2 633 50.2
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 2.2e-155 553.5 533 56.1
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 6.4e-155 552.0 521 55.7
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 4.1e-154 549.3 523 55.8
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.7e-152 543.9 521 56.0
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 3.0e-152 543.1 553 53.5
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.9e-151 540.4 545 54.7
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.2e-150 537.7 374 72.2
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 4.7e-150 535.8 568 53.7
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 6.2e-150 535.4 682 47.1
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 1.5e-148 530.8 576 52.8
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 3.4e-148 529.6 664 46.8
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 8.4e-147 525.0 661 47.2
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 1.9e-146 523.9 554 51.4
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 9.3e-146 521.5 564 51.4
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.0e-144 518.1 523 53.2
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.7e-144 517.3 522 53.3
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 2.3e-144 516.9 539 53.4
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 3.9e-144 516.2 555 51.4
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 5.1e-144 515.8 555 52.4
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 6.6e-144 515.4 554 51.6
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 2.4e-141 506.9 569 52.4
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 4.0e-141 506.1 602 48.8
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 2.2e-139 500.4 638 47.8
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.9e-139 500.0 652 47.9
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 2.9e-139 500.0 548 50.5
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 6.6e-136 488.8 665 45.1
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 6.6e-136 488.8 665 45.1
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.5e-135 487.6 646 45.8
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.7e-131 474.2 433 57.0
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 4.9e-131 472.6 522 51.9
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 1.3e-128 464.5 528 50.9
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 5.5e-122 442.6 530 48.7
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 6.7e-120 435.6 543 45.5
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 1.1e-119 434.9 602 45.0
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.0e-115 421.8 494 51.4
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 5.5e-114 416.0 627 40.5
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 1.2e-113 414.8 531 46.9
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 1.8e-112 411.0 434 53.0
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 4.2e-106 389.8 523 44.4
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 2.5e-90 337.4 204 78.4
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 1.6e-84 318.2 458 44.8
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 5.0e-83 313.2 371 48.8
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 2.6e-79 300.8 463 41.9
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 9.1e-77 292.4 348 53.2
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.2e-70 271.2 340 49.1
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 3.1e-56 224.2 324 42.6
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 3.6e-49 200.7 138 70.3
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 1.4e-48 198.7 350 41.4
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.6e-44 185.3 118 76.3
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 8.6e-43 179.5 204 49.0
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 4.4e-39 167.2 130 65.4
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.1e-35 153.7 114 71.9
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 3.6e-33 147.5 86 79.1
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 8.9e-32 142.9 118 60.2
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 2.7e-28 131.3 86 68.6
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 7.8e-28 129.8 398 26.1
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 1.0e-27 129.4 209 36.8
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.7e-27 128.6 115 53.9
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.5e-23 115.5 74 71.6
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 7.6e-23 113.2 120 50.8
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 3.8e-22 110.9 56 98.2
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 3.2e-21 107.8 56 91.1
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 5.1e-19 100.5 97 49.5
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 7.4e-18 96.7 486 22.2
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 1.8e-16 92.0 57 75.4
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 4.0e-16 90.9 53 77.4
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 6.9e-16 90.1 53 75.5
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 1.2e-15 89.4 52 78.8
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 2.0e-15 88.6 52 76.9
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 2.6e-15 88.2 59 71.2
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 5.8e-15 87.0 53 77.4
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 7.6e-15 86.7 52 76.9
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 9.9e-15 86.3 55 70.9
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 2.9e-14 84.7 53 71.7
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 3.8e-14 84.3 52 73.1
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 4.9e-14 84.0 58 69.0
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 8.4e-14 83.2 53 69.8
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 8.4e-14 83.2 54 72.2
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 1.1e-13 82.8 60 66.7
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 1.4e-13 82.4 53 71.7
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 1.9e-13 82.0 55 67.3
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 2.4e-13 81.6 53 67.9
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 4.2e-13 80.9 52 67.3
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 4.2e-13 80.9 47 74.5
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 5.5e-13 80.5 53 67.9
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 9.3e-13 79.7 64 60.9
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 1.2e-12 79.3 53 69.8
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 1.6e-12 79.0 58 58.6
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 1.3e-11 75.9 218 29.4
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 3.0e-11 74.7 58 58.6
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 3.9e-11 74.3 56 60.7
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 5.1e-11 73.9 55 58.2
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 5.1e-11 73.9 56 62.5
Sed0004834 Sechium edule HOM05D004031 ORTHO05D011186 6.7e-11 73.6 66 63.6
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 1.5e-10 72.4 63 57.1
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.8e-09 68.2 47 63.8
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 3.7e-09 67.8 71 54.9
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-08 66.2 58 56.9
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 5.3e-08 63.9 70 52.9
SEGI_01182 Sequoiadendron giganteum HOM05D004031 ORTHO05D011186 2.2e-06 58.5 32 81.2


User provided reference genes

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