Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G038330 Cucumis sativus L. HOM05D001186 ORTHO05D000971 1.3e-55 219.5 113 100.0
ClCG10G017960 Citrullus lanatus HOM05D001186 ORTHO05D000971 8.3e-39 163.7 108 81.5
MELO3C009575.2 Cucumis melo HOM05D001186 ORTHO05D000971 5.5e-35 151.0 116 75.9
Sed0014716 Sechium edule HOM05D001186 ORTHO05D000971 5.9e-21 104.4 104 59.6
FAN05G1048 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.0e-13 79.3 98 48.0
Cfa020066 Carpinus fangiana HOM05D001186 ORTHO05D043666 2.7e-13 79.0 95 50.5
FAN02G0442 Fragaria x ananassa HOM05D001186 ORTHO05D000971 4.6e-13 78.2 98 48.0
FAN05G4110 Fragaria x ananassa HOM05D001186 ORTHO05D000971 6.0e-13 77.8 98 45.9
FvH4_6g21030 Fragaria vesca HOM05D001186 ORTHO05D000971 7.8e-13 77.4 98 46.9
FAN14G0712 Fragaria x ananassa HOM05D001186 ORTHO05D000971 7.8e-13 77.4 98 46.9
CiPaw.09G024300 Carya illinoinensis HOM05D001186 ORTHO05D000971 3.0e-12 75.5 89 50.6
COL.COLO4_29493 Corchorus olitorius HOM05D001186 ORTHO05D000971 3.0e-12 75.5 113 43.4
Glyma.19G202300 Glycine max HOM05D001186 ORTHO05D000971 3.9e-12 75.1 89 48.3
Manes.08G037400 Manihot esculenta HOM05D001186 ORTHO05D000971 5.0e-12 74.7 93 51.6
FAN09G1764 Fragaria x ananassa HOM05D004834 ORTHO05D006247 8.6e-12 73.9 98 45.9
Duzib093G1110 Durio zibethinus HOM05D001186 ORTHO05D000971 1.1e-11 73.6 91 52.7
Duzib128G1674 Durio zibethinus HOM05D001186 ORTHO05D000971 1.1e-11 73.6 95 48.4
CiPaw.10G021400 Carya illinoinensis HOM05D001186 ORTHO05D000971 1.5e-11 73.2 87 52.9
Gorai.002G233400 Gossypium raimondii HOM05D001186 ORTHO05D000971 2.5e-11 72.4 86 50.0
Gohir.D01G189650 Gossypium hirsutum HOM05D001186 ORTHO05D000971 4.3e-11 71.6 85 51.8
Gohir.D07G211466 Gossypium hirsutum HOM05D001186 ORTHO05D000971 4.3e-11 71.6 85 51.8
HPP92_027454 Vanilla planifolia HOM05D001186 ORTHO05D000971 4.3e-11 71.6 87 48.3
Gohir.A01G199550 Gossypium hirsutum HOM05D001186 ORTHO05D000971 7.3e-11 70.9 86 48.8
QL06p036159 Quercus lobata HOM05D001186 ORTHO05D000971 9.5e-11 70.5 79 50.6
QL07p026339 Quercus lobata HOM05D001186 ORTHO05D000971 9.5e-11 70.5 79 50.6
Thecc.05G110300 Theobroma cacao HOM05D001186 ORTHO05D000971 2.1e-10 69.3 95 47.4
TAR623G0067 Trochodendron aralioides HOM05D001186 ORTHO05D000971 2.1e-10 69.3 80 47.5
Eucgr.A02544 Eucalyptus grandis HOM05D001186 ORTHO05D000971 3.6e-10 68.6 81 50.6
Gorai.002G154000 Gossypium raimondii HOM05D001186 ORTHO05D000971 6.2e-10 67.8 72 52.8
Glyma.03G204900 Glycine max HOM05D001186 ORTHO05D000971 8.1e-10 67.4 108 38.0
PSO210G1654 Papaver somniferum HOM05D001186 ORTHO05D000971 8.1e-10 67.4 95 43.2
Haze_20129 Corylus avellana HOM05D001186 ORTHO05D000971 1.1e-09 67.0 70 54.3
Gohir.D01G123101 Gossypium hirsutum HOM05D001186 ORTHO05D000971 1.4e-09 66.6 72 52.8
Ciclev10013749m.g Citrus clementina HOM05D001186 ORTHO05D000971 1.8e-09 66.2 95 45.3
HPP92_000062 Vanilla planifolia HOM05D001186 ORTHO05D000971 1.8e-09 66.2 83 48.2
Medtr1g028910 Medicago truncatula HOM05D001186 ORTHO05D000971 3.1e-09 65.5 80 48.8
Actinidia15150 Actinidia chinensis HOM05D001186 ORTHO05D000971 5.2e-09 64.7 79 49.4
TPR.G33348 Trifolium pratense HOM05D000033 ORTHO05D001999 5.2e-09 64.7 86 43.0
Lsat_1_v5_gn_6_34220 Lactuca sativa HOM05D001186 ORTHO05D000971 6.8e-09 64.3 70 47.1
Haze_20128 Corylus avellana HOM05D001186 ORTHO05D000971 8.9e-09 63.9 77 48.1
Phvul.008G159700 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 1.2e-08 63.5 72 54.2
Potri.006G199300 Populus trichocarpa HOM05D001186 ORTHO05D000971 2.0e-08 62.8 86 43.0
TAR369G0643 Trochodendron aralioides HOM05D001186 ORTHO05D000971 2.6e-08 62.4 73 49.3
FAN15G3153 Fragaria x ananassa HOM05D001186 ORTHO05D000971 4.4e-08 61.6 101 41.6
HPP92_001096 Vanilla planifolia HOM05D001186 ORTHO05D000971 4.4e-08 61.6 88 45.5
VMungo1309G1275 Vigna mungo HOM05D001186 ORTHO05D000971 4.4e-08 61.6 80 47.5
Sabra05G0144600 Salix brachista HOM05D001186 ORTHO05D000971 5.8e-08 61.2 87 43.7
HPP92_011922 Vanilla planifolia HOM05D001186 ORTHO05D000971 5.8e-08 61.2 89 49.4
Atru.chr8.1283 Acer truncatum HOM05D001186 ORTHO05D000971 7.5e-08 60.8 77 46.8
Oeu037616.1 Olea europaea HOM05D001186 ORTHO05D000971 7.5e-08 60.8 93 40.9
ATR0772G190 Amborella trichopoda HOM05D001186 ORTHO05D000971 1.3e-07 60.1 80 46.2
CiPaw.15G019500 Carya illinoinensis HOM05D001186 ORTHO05D000971 1.3e-07 60.1 72 51.4
Sed0010828 Sechium edule HOM05D001186 ORTHO05D000971 1.3e-07 60.1 76 50.0
Cfa018343 Carpinus fangiana HOM05D001186 ORTHO05D000971 2.2e-07 59.3 73 49.3
Cc11_g10020 Coffea canephora HOM05D001186 ORTHO05D000971 2.2e-07 59.3 84 41.7
Glyma.13G039800 Glycine max HOM05D001186 ORTHO05D000971 2.2e-07 59.3 69 50.7
Lalb_Chr11g0066501 Lupinus albus HOM05D001186 ORTHO05D000971 2.2e-07 59.3 69 49.3
TAR628G0442 Trochodendron aralioides HOM05D001186 ORTHO05D000971 2.2e-07 59.3 71 50.7
COL.COLO4_36019 Corchorus olitorius HOM05D001186 ORTHO05D000971 2.9e-07 58.9 72 48.6
FvH4_2g14340 Fragaria vesca HOM05D001186 ORTHO05D000971 3.7e-07 58.5 79 45.6
FAN24G3322 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.7e-07 58.5 79 45.6
FAN27G1120 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.7e-07 58.5 79 45.6
Glyma.04G239400 Glycine max HOM05D001186 ORTHO05D000971 3.7e-07 58.5 78 46.2
Peaxi162Scf00051g00055 Petunia axillaris HOM05D001186 ORTHO05D000971 3.7e-07 58.5 82 45.1
Phvul.009G136500 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 3.7e-07 58.5 102 41.2
Prupe.8G022500 Prunus persica HOM05D001186 ORTHO05D000971 3.7e-07 58.5 82 50.0
FAN20G2326 Fragaria x ananassa HOM05D001186 ORTHO05D000971 4.9e-07 58.2 79 45.6
Glyma.06G124400 Glycine max HOM05D001186 ORTHO05D000971 4.9e-07 58.2 78 47.4
Oeu032976.1 Olea europaea HOM05D001186 ORTHO05D000971 4.9e-07 58.2 97 41.2
Oeu051260.1 Olea europaea HOM05D001186 ORTHO05D000971 4.9e-07 58.2 106 38.7
Potri.005G189300 Populus trichocarpa HOM05D001186 ORTHO05D000971 4.9e-07 58.2 94 39.4
HPP92_016162 Vanilla planifolia HOM05D001186 ORTHO05D000971 4.9e-07 58.2 101 38.6
ATR0697G169 Amborella trichopoda HOM05D001186 ORTHO05D000971 6.4e-07 57.8 72 51.4
CSS0012233 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 6.4e-07 57.8 91 38.5
CANSAT64G0006 Cannabis sativa HOM05D001186 ORTHO05D000971 6.4e-07 57.8 71 45.1
Thhalv10008673m.g Eutrema salsugineum HOM05D001186 ORTHO05D000971 6.4e-07 57.8 102 40.2
TWI60G0870 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 6.4e-07 57.8 89 41.6
Zm00001eb259970 Zea mays HOM05D001186 ORTHO05D000971 6.4e-07 57.8 70 45.7
CiPaw.04G086200 Carya illinoinensis HOM05D001186 ORTHO05D000971 8.3e-07 57.4 94 42.6
DCAR_026737 Daucus carota HOM05D001186 ORTHO05D000971 8.3e-07 57.4 68 41.2
HanXRQChr12g0364631 Helianthus annuus HOM05D001186 ORTHO05D000971 8.3e-07 57.4 77 42.9
Hma1.2p1_0006F.1_g004610 Hydrangea macrophylla HOM05D001186 ORTHO05D000971 8.3e-07 57.4 97 40.2
Lsat_1_v5_gn_1_8801 Lactuca sativa HOM05D001186 ORTHO05D000971 8.3e-07 57.4 86 45.3
Nn1g06171 Nelumbo nucifera HOM05D001186 ORTHO05D000971 8.3e-07 57.4 83 47.0
PGR044G0866 Punica granatum HOM05D001186 ORTHO05D000971 8.3e-07 57.4 76 48.7
Aqoxy6G00387 Aquilegia oxysepala HOM05D001186 ORTHO05D000971 1.1e-06 57.0 76 44.7
Carub.0003s1847 Capsella rubella HOM05D001186 ORTHO05D000971 1.1e-06 57.0 78 47.4
Dinv31630 Davidia involucrata HOM05D001186 ORTHO05D000971 1.1e-06 57.0 70 44.3
Duzib041G0538 Durio zibethinus HOM05D001186 ORTHO05D000971 1.1e-06 57.0 80 45.0
Glyma.14G124800 Glycine max HOM05D001186 ORTHO05D000971 1.1e-06 57.0 88 40.9
Lj1g0004766 Lotus japonicus HOM05D001186 ORTHO05D000971 1.1e-06 57.0 88 43.2
Nitab4.5_0006679g0010 Nicotiana tabacum HOM05D001186 ORTHO05D000971 1.1e-06 57.0 88 43.2
Oeu014479.1 Olea europaea HOM05D001186 ORTHO05D000971 1.1e-06 57.0 95 42.1
Phvul.009G148500 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 1.1e-06 57.0 84 44.0
QL01p041179 Quercus lobata HOM05D001186 ORTHO05D000971 1.1e-06 57.0 78 39.7
TWI31G0680 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 1.1e-06 57.0 102 35.3
HPP92_026215 Vanilla planifolia HOM05D001186 ORTHO05D000971 1.1e-06 57.0 101 38.6
Atru.chr11.114 Acer truncatum HOM05D001186 ORTHO05D000971 1.4e-06 56.6 75 40.0
Lalb_Chr21g0308871 Lupinus albus HOM05D001186 ORTHO05D000971 1.4e-06 56.6 76 44.7
Sed0025511 Sechium edule HOM05D001186 ORTHO05D000971 1.4e-06 56.6 74 48.6
TAR376G0474 Trochodendron aralioides HOM05D001186 ORTHO05D000971 1.4e-06 56.6 73 49.3
TAR381G0526 Trochodendron aralioides HOM05D001186 ORTHO05D000971 1.4e-06 56.6 74 48.6
HPP92_003212 Vanilla planifolia HOM05D001186 ORTHO05D000971 1.4e-06 56.6 74 50.0
AL2G27310 Arabidopsis lyrata HOM05D001186 ORTHO05D000971 1.9e-06 56.2 69 47.8
A01p35790 Brassica napus HOM05D001186 ORTHO05D000971 1.9e-06 56.2 79 43.0
Nn2g14422 Nelumbo nucifera HOM05D001186 ORTHO05D000971 1.9e-06 56.2 78 43.6
Sabra06G0153200 Salix brachista HOM05D001186 ORTHO05D000971 1.9e-06 56.2 79 41.8
SalBow8G5321 Salvia bowleyana HOM05D001186 ORTHO05D000971 1.9e-06 56.2 67 47.8
Glyma.06G151400 Glycine max HOM05D001186 ORTHO05D000971 2.4e-06 55.8 76 47.4
Glyma.10G273300 Glycine max HOM05D001186 ORTHO05D000971 2.4e-06 55.8 71 45.1
ATR1125G102 Amborella trichopoda HOM05D001186 ORTHO05D000971 3.2e-06 55.5 68 41.2
EL10Ac6g14383 Beta vulgaris HOM05D001186 ORTHO05D000971 3.2e-06 55.5 70 40.0
C05p20190 Brassica napus HOM05D001626 ORTHO05D001563 3.2e-06 55.5 93 38.7
BolC5t30713H Brassica oleracea HOM05D001626 ORTHO05D001563 3.2e-06 55.5 93 38.7
Manes.18G089366 Manihot esculenta HOM05D001186 ORTHO05D000971 3.2e-06 55.5 95 41.1
SalBow7G3795 Salvia bowleyana HOM05D001186 ORTHO05D000971 3.2e-06 55.5 68 47.1
HPP92_000981 Vanilla planifolia HOM05D001186 ORTHO05D000971 3.2e-06 55.5 77 45.5
Aqoxy1G00584 Aquilegia oxysepala HOM05D001186 ORTHO05D000971 4.1e-06 55.1 74 39.2
A07p15190 Brassica napus HOM05D001186 ORTHO05D000971 4.1e-06 55.1 96 38.5
BraA07t29260Z Brassica rapa HOM05D001626 ORTHO05D001563 4.1e-06 55.1 96 38.5
Duzib093G1352 Durio zibethinus HOM05D001186 ORTHO05D000971 4.1e-06 55.1 73 47.9
Duzib116G0881 Durio zibethinus HOM05D001186 ORTHO05D000971 4.1e-06 55.1 72 45.8
FAN26G1531 Fragaria x ananassa HOM05D001186 ORTHO05D000971 4.1e-06 55.1 83 47.0
Lalb_Chr06g0166031 Lupinus albus HOM05D001186 ORTHO05D000971 4.1e-06 55.1 69 47.8
QL02p024757 Quercus lobata HOM05D001186 ORTHO05D000971 4.1e-06 55.1 72 47.2
unitig_899.g14702 Utricularia gibba HOM05D001186 ORTHO05D000971 4.1e-06 55.1 92 42.4
VMungo0251G0634 Vigna mungo HOM05D001186 ORTHO05D000971 4.1e-06 55.1 85 42.4
VMungo1309G2779 Vigna mungo HOM05D001186 ORTHO05D000971 4.1e-06 55.1 78 43.6
BcaC05g26036 Brassica carinata HOM05D001186 ORTHO05D000971 5.4e-06 54.7 93 38.7
Cfa020067 Carpinus fangiana HOM05D001186 ORTHO05D000971 5.4e-06 54.7 77 40.3
Ca_16665_v3 Cicer arietinum L. HOM05D001186 ORTHO05D000971 5.4e-06 54.7 72 48.6
Haze_25129 Corylus avellana HOM05D001186 ORTHO05D000971 5.4e-06 54.7 78 46.2
CsaV3_6G030890 Cucumis sativus L. HOM05D001186 ORTHO05D000971 5.4e-06 54.7 69 50.7
DCAR_014416 Daucus carota HOM05D001186 ORTHO05D000971 5.4e-06 54.7 78 43.6
DCAR_014417 Daucus carota HOM05D001186 ORTHO05D000971 5.4e-06 54.7 78 43.6
Dinv25835 Davidia involucrata HOM05D001186 ORTHO05D000971 5.4e-06 54.7 93 45.2
Gohir.A02G108503 Gossypium hirsutum HOM05D001186 ORTHO05D000971 5.4e-06 54.7 89 43.8
Gohir.D03G070700 Gossypium hirsutum HOM05D001186 ORTHO05D000971 5.4e-06 54.7 89 43.8
Gorai.003G089500 Gossypium raimondii HOM05D001186 ORTHO05D000971 5.4e-06 54.7 89 43.8
Lalb_Chr04g0254691 Lupinus albus HOM05D001186 ORTHO05D000971 5.4e-06 54.7 67 41.8
MD05G1018300 Malus domestica HOM05D001186 ORTHO05D000971 5.4e-06 54.7 88 42.0
Medtr1g028920 Medicago truncatula HOM05D001186 ORTHO05D000971 5.4e-06 54.7 89 43.8
Os02g0539500 Oryza sativa ssp. japonica HOM05D001186 ORTHO05D000971 5.4e-06 54.7 93 44.1
PGR042G2791 Punica granatum HOM05D001186 ORTHO05D000971 5.4e-06 54.7 80 42.5
PGSC0003DMG400017564 Solanum tuberosum HOM05D001186 ORTHO05D000971 5.4e-06 54.7 95 43.2
EL10Ac1g01490 Beta vulgaris HOM05D001186 ORTHO05D000971 7.1e-06 54.3 72 47.2
A06p17360 Brassica napus HOM05D001626 ORTHO05D001563 7.1e-06 54.3 89 39.3
BraA02t06567Z Brassica rapa HOM05D001186 ORTHO05D000971 7.1e-06 54.3 94 38.3
BraA06t24833Z Brassica rapa HOM05D001626 ORTHO05D001563 7.1e-06 54.3 89 39.3
DCAR_001357 Daucus carota HOM05D001186 ORTHO05D000971 7.1e-06 54.3 69 50.7
Duzib264G1003 Durio zibethinus HOM05D001186 ORTHO05D000971 7.1e-06 54.3 73 45.2
FAN23G1856 Fragaria x ananassa HOM05D001186 ORTHO05D000971 7.1e-06 54.3 83 47.0
FAN28G0084 Fragaria x ananassa HOM05D001186 ORTHO05D000971 7.1e-06 54.3 83 47.0
HanXRQChr12g0364621 Helianthus annuus HOM05D001186 ORTHO05D000971 7.1e-06 54.3 71 45.1
Lj2g0018313 Lotus japonicus HOM05D001186 ORTHO05D000971 7.1e-06 54.3 67 46.3
Potri.002G070600 Populus trichocarpa HOM05D001186 ORTHO05D000971 7.1e-06 54.3 76 43.4
Sopen04g026910 Solanum pennellii HOM05D001186 ORTHO05D000971 7.1e-06 54.3 89 39.3
Thecc.08G146900 Theobroma cacao HOM05D001186 ORTHO05D000971 7.1e-06 54.3 84 42.9
C02p24610 Brassica napus HOM05D001186 ORTHO05D000971 9.2e-06 53.9 68 45.6
BolC2t08559H Brassica oleracea HOM05D001186 ORTHO05D000971 9.2e-06 53.9 68 45.6
Carub.0001s2072 Capsella rubella HOM05D001186 ORTHO05D000971 9.2e-06 53.9 79 43.0
CARHR021710 Cardamine hirsuta HOM05D001186 ORTHO05D000971 9.2e-06 53.9 82 41.5
ClCG08G006550 Citrullus lanatus HOM05D001186 ORTHO05D000971 9.2e-06 53.9 76 47.4
Haze_17728 Corylus avellana HOM05D001186 ORTHO05D000971 9.2e-06 53.9 73 47.9
Glyma.04G214700 Glycine max HOM05D001186 ORTHO05D000971 9.2e-06 53.9 78 46.2
HanXRQChr02g0037451 Helianthus annuus HOM05D001186 ORTHO05D000971 9.2e-06 53.9 90 43.3
MBI17_g11165_MAGBIO Magnolia biondii HOM05D001186 ORTHO05D000971 9.2e-06 53.9 72 45.8
Manes.02G176600 Manihot esculenta HOM05D001186 ORTHO05D000971 9.2e-06 53.9 76 44.7
Nitab4.5_0000427g0090 Nicotiana tabacum HOM05D001186 ORTHO05D000971 9.2e-06 53.9 89 41.6
Oeu046011.1 Olea europaea HOM05D001186 ORTHO05D000971 9.2e-06 53.9 97 36.1
Sed0016046 Sechium edule HOM05D001186 ORTHO05D000971 9.2e-06 53.9 73 42.5


User provided reference genes

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