Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.7e-44 182.6 109 100.0
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 2.2e-44 182.2 109 93.6
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.1e-43 179.9 109 85.3
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 7.2e-40 167.2 109 79.8
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.2e-32 141.4 109 64.2
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 1.2e-31 139.8 109 64.2
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 1.6e-26 122.9 109 57.8
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 3.5e-26 121.7 109 58.7
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 5.9e-26 120.9 109 57.8
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 2.9e-25 118.6 107 57.0
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 3.8e-25 118.2 109 56.9
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 1.2e-23 113.2 109 52.3
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 3.6e-23 111.7 109 54.1
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 6.1e-23 110.9 109 50.5
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 6.1e-23 110.9 112 52.7
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.0e-22 110.2 109 51.4
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.4e-22 109.8 109 50.5
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 2.3e-22 109.0 109 50.5
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 4.0e-22 108.2 109 50.5
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 6.8e-22 107.5 99 58.6
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 1.5e-21 106.3 109 49.5
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 3.4e-21 105.1 109 52.3
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 3.4e-21 105.1 109 50.5
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 3.4e-21 105.1 109 49.5
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 5.7e-21 104.4 109 49.5
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 7.5e-21 104.0 109 49.5
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 7.5e-21 104.0 109 49.5
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 2.2e-20 102.4 129 46.5
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 4.9e-20 101.3 109 47.7
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 6.3e-20 100.9 109 46.8
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 8.3e-20 100.5 109 47.7
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 1.4e-19 99.8 109 48.6
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 1.4e-19 99.8 109 47.7
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 1.4e-19 99.8 109 46.8
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 7.0e-19 97.4 109 45.9
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.6e-18 96.3 109 45.0
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.6e-18 96.3 109 45.0
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.6e-18 96.3 109 45.0
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 1.6e-18 96.3 109 46.8
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.0e-18 95.9 109 46.8
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 3.5e-18 95.1 109 45.9
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 4.5e-18 94.7 109 45.0
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 4.5e-18 94.7 109 43.1
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 4.5e-18 94.7 109 44.0
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 4.5e-18 94.7 109 44.0
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 4.5e-18 94.7 109 43.1
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 5.9e-18 94.4 109 43.1
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 5.9e-18 94.4 109 44.0
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 7.8e-18 94.0 109 44.0
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 7.8e-18 94.0 109 46.8
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 7.8e-18 94.0 109 45.0
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.0e-17 93.6 118 46.6
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 1.7e-17 92.8 101 47.5
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.7e-17 92.8 109 45.9
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.7e-17 92.8 109 45.9
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 1.7e-17 92.8 109 45.9
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 2.3e-17 92.4 110 46.4
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 2.9e-17 92.0 109 44.0
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 5.0e-17 91.3 109 45.0
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 6.6e-17 90.9 109 41.3
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 8.6e-17 90.5 109 45.9
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 8.6e-17 90.5 108 48.1
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 8.6e-17 90.5 109 45.0
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.1e-16 90.1 89 52.8
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 1.5e-16 89.7 109 42.2
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.5e-16 89.7 109 45.9
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.9e-16 89.4 109 45.9
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 3.3e-16 88.6 109 41.3
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.3e-16 88.2 109 43.1
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 4.3e-16 88.2 89 50.6
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 4.3e-16 88.2 108 46.3
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 7.3e-16 87.4 109 45.0
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 7.3e-16 87.4 89 50.6
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 7.3e-16 87.4 89 50.6
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 7.3e-16 87.4 109 44.0
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 9.5e-16 87.0 109 45.9
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 9.5e-16 87.0 110 46.4
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 1.2e-15 86.7 93 50.5
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.6e-15 86.3 110 49.1
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 1.6e-15 86.3 109 44.0
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.6e-15 86.3 109 39.4
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 2.1e-15 85.9 110 43.6
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 3.6e-15 85.1 109 41.3
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 4.7e-15 84.7 108 45.4
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 4.7e-15 84.7 104 44.2
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 6.1e-15 84.3 109 43.1
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 8.0e-15 84.0 89 50.6
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 8.0e-15 84.0 90 50.0
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 8.0e-15 84.0 108 42.6
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 1.0e-14 83.6 107 44.9
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.0e-14 83.6 109 44.0
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 1.4e-14 83.2 109 43.1
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.4e-14 83.2 89 48.3
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.4e-14 83.2 109 43.1
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.4e-14 83.2 109 43.1
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 1.8e-14 82.8 107 44.9
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.8e-14 82.8 109 44.0
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 1.8e-14 82.8 125 40.0
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 1.8e-14 82.8 89 51.7
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.8e-14 82.8 110 41.8
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 2.3e-14 82.4 89 52.8
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 2.3e-14 82.4 107 41.1
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 4.0e-14 81.6 89 50.6
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 4.0e-14 81.6 110 41.8
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 6.8e-14 80.9 108 44.4
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 6.8e-14 80.9 109 51.4
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 8.9e-14 80.5 89 50.6
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 1.2e-13 80.1 89 48.3
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 1.5e-13 79.7 110 40.9
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 2.0e-13 79.3 89 49.4
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 2.0e-13 79.3 89 50.6
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 2.0e-13 79.3 89 50.6
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 2.0e-13 79.3 110 40.9
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 2.0e-13 79.3 110 40.9
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 2.0e-13 79.3 89 48.3
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 2.0e-13 79.3 89 49.4
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 2.0e-13 79.3 109 43.1
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 2.6e-13 79.0 110 42.7
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.6e-13 79.0 109 43.1
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 5.8e-13 77.8 89 48.3
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 5.8e-13 77.8 89 50.6
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 5.8e-13 77.8 100 40.0
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 5.8e-13 77.8 135 46.7
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 7.5e-13 77.4 89 47.2
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 9.8e-13 77.0 111 42.3
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 9.8e-13 77.0 90 51.1
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 9.8e-13 77.0 90 51.1
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 9.8e-13 77.0 89 49.4
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 1.3e-12 76.6 108 38.9
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 1.7e-12 76.3 104 44.2
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 2.2e-12 75.9 84 50.0
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 2.2e-12 75.9 108 38.0
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.2e-12 75.9 110 39.1
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 2.2e-12 75.9 109 38.5
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 3.7e-12 75.1 90 50.0
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 3.7e-12 75.1 90 50.0
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 4.9e-12 74.7 106 41.5
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 8.3e-12 73.9 105 41.9
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 8.3e-12 73.9 89 47.2
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 1.1e-11 73.6 86 46.5
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.4e-11 73.2 107 43.0
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 1.9e-11 72.8 89 46.1
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.9e-11 72.8 109 39.4
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 2.4e-11 72.4 91 46.2
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 2.4e-11 72.4 86 45.3
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.4e-11 72.4 83 44.6
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 3.2e-11 72.0 83 44.6
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.2e-11 72.0 109 40.4
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 5.4e-11 71.2 108 38.0
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.4e-11 71.2 98 39.8
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 9.2e-11 70.5 108 31.5
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.2e-10 70.1 90 41.1
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.6e-10 69.7 89 43.8
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.0e-10 69.3 107 36.4
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 4.6e-10 68.2 91 41.8
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 6.0e-10 67.8 75 48.0
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 6.0e-10 67.8 109 37.6
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 7.8e-10 67.4 90 37.8
QL07p037620 Quercus lobata HOM05D003660 ORTHO05D003415 1.3e-09 66.6 40 75.0
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 2.3e-09 65.9 86 43.0
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 6.6e-09 64.3 110 40.0
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 1.1e-08 63.5 101 38.6
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 1.9e-08 62.8 55 56.4
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 2.5e-08 62.4 76 46.1
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 4.3e-08 61.6 100 35.0
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 4.3e-08 61.6 91 38.5
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 5.6e-08 61.2 80 41.2
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 7.3e-08 60.8 80 46.2
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 1.2e-07 60.1 111 36.9
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 1.2e-07 60.1 111 36.9
Sabra04G0135400 Salix brachista HOM05D003660 ORTHO05D003415 1.2e-07 60.1 55 56.4
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 6.2e-07 57.8 107 31.8
vmacro07457 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 6.2e-07 57.8 49 59.2
A10p30210 Brassica napus HOM05D008756 ORTHO05D003415 8.0e-07 57.4 108 31.5
FvH4_6g19790 Fragaria vesca HOM05D003660 ORTHO05D003415 8.0e-07 57.4 40 65.0
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 3.1e-06 55.5 70 47.1
Haze_23336 Corylus avellana HOM05D003660 ORTHO05D003415 6.8e-06 54.3 41 63.4


User provided reference genes

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