Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 1.1e-84 316.6 158 100.0
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 6.1e-80 300.8 158 93.0
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 9.0e-76 287.0 158 88.6
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 8.5e-74 280.4 158 84.2
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 1.2e-72 276.6 158 82.3
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 3.1e-68 261.9 156 77.6
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 9.1e-68 260.4 156 76.9
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 2.0e-67 259.2 156 77.6
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 2.6e-67 258.8 156 78.2
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 2.6e-67 258.8 156 77.6
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 2.6e-67 258.8 156 77.6
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 5.9e-67 257.7 156 75.6
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 7.7e-67 257.3 156 76.9
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 1.7e-66 256.1 156 76.3
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 6.5e-66 254.2 151 79.5
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 1.1e-65 253.4 150 78.0
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 1.4e-65 253.1 156 76.3
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 1.9e-65 252.7 156 76.3
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 2.5e-65 252.3 147 76.9
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 4.2e-65 251.5 150 78.0
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 5.5e-65 251.1 156 74.4
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 5.5e-65 251.1 156 77.6
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 9.4e-65 250.4 155 73.5
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 1.2e-64 250.0 156 75.0
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 1.2e-64 250.0 156 75.0
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 1.6e-64 249.6 156 76.9
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 2.7e-64 248.8 154 76.6
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 2.7e-64 248.8 156 73.7
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 2.7e-64 248.8 150 76.7
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 4.7e-64 248.1 156 73.1
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 6.1e-64 247.7 156 74.4
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 6.1e-64 247.7 151 76.2
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 7.9e-64 247.3 150 76.0
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 7.9e-64 247.3 152 75.7
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 7.9e-64 247.3 152 75.7
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 1.0e-63 246.9 153 71.2
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.0e-63 246.9 156 76.3
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 1.0e-63 246.9 147 76.9
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 1.8e-63 246.1 156 74.4
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 1.8e-63 246.1 150 74.7
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 1.8e-63 246.1 151 76.2
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 1.8e-63 246.1 148 78.4
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 3.0e-63 245.4 156 75.0
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 3.0e-63 245.4 156 75.0
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 3.0e-63 245.4 155 76.8
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 3.9e-63 245.0 155 73.5
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 3.9e-63 245.0 156 73.1
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 8.8e-63 243.8 156 75.0
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.5e-62 243.0 148 77.7
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 2.6e-62 242.3 156 73.1
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 2.6e-62 242.3 152 74.3
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 4.4e-62 241.5 156 72.4
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 5.7e-62 241.1 151 74.2
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 5.7e-62 241.1 156 73.1
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 9.7e-62 240.4 146 76.0
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 1.3e-61 240.0 158 71.5
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 1.3e-61 240.0 151 72.8
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 1.7e-61 239.6 150 73.3
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 1.7e-61 239.6 152 73.0
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.7e-61 239.6 156 71.8
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 2.2e-61 239.2 156 72.4
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 2.8e-61 238.8 156 72.4
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 2.8e-61 238.8 156 72.4
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 3.7e-61 238.4 143 76.9
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 3.7e-61 238.4 148 75.0
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 3.7e-61 238.4 158 73.4
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 4.8e-61 238.0 151 71.5
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 4.8e-61 238.0 156 71.8
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 6.3e-61 237.7 156 71.8
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 1.1e-60 236.9 156 73.1
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 1.4e-60 236.5 153 71.2
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 1.4e-60 236.5 150 71.3
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 1.8e-60 236.1 153 71.2
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 2.4e-60 235.7 151 70.9
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 5.3e-60 234.6 156 71.2
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 7.0e-60 234.2 147 73.5
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 7.0e-60 234.2 151 70.2
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 7.0e-60 234.2 153 69.3
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 1.2e-59 233.4 156 71.2
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 1.2e-59 233.4 158 67.1
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 2.6e-59 232.3 155 72.9
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 6.5e-58 227.6 136 77.2
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.9e-57 226.1 158 69.6
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 3.2e-57 225.3 144 72.2
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 9.4e-57 223.8 150 68.7
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 1.6e-56 223.0 156 66.7
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 2.1e-56 222.6 159 66.7
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 2.7e-56 222.2 158 65.8
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 3.6e-56 221.9 150 68.0
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 1.0e-55 220.3 157 66.9
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 1.4e-55 219.9 158 65.8
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 1.4e-55 219.9 145 69.7
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 2.3e-55 219.2 156 65.4
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 3.0e-55 218.8 143 69.9
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 3.0e-55 218.8 144 69.4
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 5.2e-55 218.0 156 64.7
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 6.7e-55 217.6 145 68.3
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 2.0e-54 216.1 154 64.9
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 2.0e-54 216.1 154 63.6
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 3.3e-54 215.3 156 62.8
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 4.4e-54 214.9 156 62.8
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 2.2e-53 212.6 154 62.3
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 3.7e-53 211.8 154 63.6
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 3.7e-53 211.8 154 63.6
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 3.1e-52 208.8 156 61.5
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 5.3e-52 208.0 158 63.3
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 7.0e-52 207.6 143 64.3
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 2.0e-51 206.1 127 77.2
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 1.7e-50 203.0 145 64.1
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.1e-49 200.3 142 63.4
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 1.1e-49 200.3 151 58.3
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 3.6e-48 195.3 141 60.3
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 1.2e-46 190.3 156 59.6
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 2.0e-46 189.5 124 73.4
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.7e-45 186.4 122 70.5
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 8.5e-42 174.1 142 57.7
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 4.7e-40 168.3 131 58.0
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 1.2e-38 163.7 146 52.7
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 4.4e-38 161.8 97 73.2
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 7.5e-38 161.0 116 68.1
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 1.3e-37 160.2 146 52.1
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 1.7e-37 159.8 155 46.5
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 7.0e-36 154.5 142 52.1
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 1.7e-34 149.8 135 57.0
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 1.6e-32 143.3 100 65.0
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 1.0e-31 140.6 142 52.8
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 2.6e-30 136.0 141 51.1
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 9.8e-30 134.0 151 47.7
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 7.0e-28 127.9 100 57.0
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 3.0e-26 122.5 144 43.1
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 6.6e-26 121.3 150 46.0
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 8.0e-24 114.4 75 69.3
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 2.6e-22 109.4 84 57.1
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 3.7e-21 105.5 85 56.5


User provided reference genes

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