Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G037230 Cucumis sativus L. HOM05D003488 ORTHO05D022332 9.4e-153 543.5 278 100.0
Solyc09g009470.1 Solanum lycopersicum HOM05D003488 ORTHO05D004214 1.7e-32 144.1 134 53.0
Sopen09g004200 Solanum pennellii HOM05D003488 ORTHO05D004214 1.7e-32 144.1 134 53.0
Peaxi162Scf00290g00084 Petunia axillaris HOM05D003488 ORTHO05D004214 3.7e-32 142.9 134 53.0
PGSC0003DMG403002701 Solanum tuberosum HOM05D003488 ORTHO05D004214 8.3e-32 141.7 134 52.2
Aqoxy4G02784 Aquilegia oxysepala HOM05D003488 ORTHO05D004214 1.1e-31 141.4 138 50.7
COL.COLO4_19885 Corchorus olitorius HOM05D003488 ORTHO05D004214 3.1e-31 139.8 191 42.9
CAN.G397.11 Capsicum annuum HOM05D003488 ORTHO05D004214 4.1e-31 139.4 134 50.7
MELO3C024542.2 Cucumis melo HOM05D003488 ORTHO05D004214 1.2e-30 137.9 138 50.7
Duzib168G1363 Durio zibethinus HOM05D003488 ORTHO05D004214 1.6e-30 137.5 191 41.4
CsaV3_6G040650 Cucumis sativus L. HOM05D003488 ORTHO05D004214 3.5e-30 136.3 138 50.0
DCAR_013382 Daucus carota HOM05D003488 ORTHO05D004214 3.5e-30 136.3 139 51.1
Gohir.D09G095200 Gossypium hirsutum HOM05D003488 ORTHO05D004214 3.5e-30 136.3 134 50.0
Atru.chr3.3255 Acer truncatum HOM05D003488 ORTHO05D004214 4.5e-30 136.0 191 42.4
Dinv21216 Davidia involucrata HOM05D003488 ORTHO05D004214 4.5e-30 136.0 134 52.2
Gohir.A09G095500 Gossypium hirsutum HOM05D003488 ORTHO05D004214 4.5e-30 136.0 134 49.3
Gohir.D07G113900 Gossypium hirsutum HOM05D003488 ORTHO05D004214 4.5e-30 136.0 191 40.8
Gorai.001G122200 Gossypium raimondii HOM05D003488 ORTHO05D004214 4.5e-30 136.0 191 40.8
Gorai.006G111900 Gossypium raimondii HOM05D003488 ORTHO05D004214 4.5e-30 136.0 134 49.3
Nn2g14149 Nelumbo nucifera HOM05D003488 ORTHO05D004214 4.5e-30 136.0 159 46.5
Dinv31679 Davidia involucrata HOM05D003488 ORTHO05D004214 5.9e-30 135.6 134 51.5
Gohir.A07G110300 Gossypium hirsutum HOM05D003488 ORTHO05D004214 5.9e-30 135.6 191 40.8
QL01p012332 Quercus lobata HOM05D003488 ORTHO05D004214 1.3e-29 134.4 190 42.1
Cpa.g.sc1448.1 Carica papaya HOM05D003488 ORTHO05D004214 1.7e-29 134.0 201 40.3
Nitab4.5_0001725g0160 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.7e-29 134.0 134 49.3
ECA236G1444 Erigeron canadensis HOM05D003488 ORTHO05D004214 2.3e-29 133.7 138 47.1
PSO339G0354 Papaver somniferum HOM05D003488 ORTHO05D004214 2.3e-29 133.7 134 50.7
Sopen10g032950 Solanum pennellii HOM05D003488 ORTHO05D004214 2.3e-29 133.7 134 50.7
PGSC0003DMG400028258 Solanum tuberosum HOM05D003488 ORTHO05D004214 2.3e-29 133.7 134 50.7
Nitab4.5_0000132g0010 Nicotiana tabacum HOM05D003488 ORTHO05D004214 2.9e-29 133.3 134 50.0
Solyc10g083480.2 Solanum lycopersicum HOM05D003488 ORTHO05D004214 3.8e-29 132.9 134 50.7
Lj3A997T49 Lonicera japonica HOM05D003488 ORTHO05D004214 5.0e-29 132.5 134 50.0
Nn6g34912 Nelumbo nucifera HOM05D003488 ORTHO05D004214 5.0e-29 132.5 138 48.6
Lsat_1_v5_gn_8_76881 Lactuca sativa HOM05D003488 ORTHO05D004214 6.6e-29 132.1 138 47.8
Nitab4.5_0005483g0030 Nicotiana tabacum HOM05D003488 ORTHO05D004214 6.6e-29 132.1 134 48.5
CSS0019661 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 8.6e-29 131.7 138 47.1
CSS0032778 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 8.6e-29 131.7 134 51.5
Hma1.2p1_0084F.1_g043700 Hydrangea macrophylla HOM05D003488 ORTHO05D004214 1.1e-28 131.3 134 51.5
Nitab4.5_0000963g0070 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.5e-28 131.0 133 49.6
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 1.5e-28 131.0 138 50.7
TWI31G0838 Tripterygium wilfordii HOM05D003488 ORTHO05D004214 1.5e-28 131.0 159 42.8
TAR633G2222 Trochodendron aralioides HOM05D003488 ORTHO05D004214 1.5e-28 131.0 134 50.0
MSTRG.26643 Avicennia marina HOM05D003488 ORTHO05D004214 1.9e-28 130.6 134 50.7
Peaxi162Scf00163g00052 Petunia axillaris HOM05D003488 ORTHO05D004214 1.9e-28 130.6 134 49.3
Migut.J01046 Erythranthe guttata HOM05D003488 ORTHO05D004214 2.5e-28 130.2 134 50.0
Ciclev10028521m.g Citrus clementina HOM05D003488 ORTHO05D004214 3.3e-28 129.8 134 49.3
CAN.G1039.14 Capsicum annuum HOM05D003488 ORTHO05D004214 4.2e-28 129.4 134 49.3
PSO384G1288 Papaver somniferum HOM05D003488 ORTHO05D004214 4.2e-28 129.4 134 50.0
Manes.09G056000 Manihot esculenta HOM05D003488 ORTHO05D004214 5.5e-28 129.0 138 47.1
Phvul.011G093800 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 5.5e-28 129.0 191 41.4
Thecc.09G284200 Theobroma cacao HOM05D003488 ORTHO05D004214 5.5e-28 129.0 191 40.8
Sabra04G0137300 Salix brachista HOM05D003488 ORTHO05D004214 7.2e-28 128.6 206 37.9
Rhsim03G0075900 Rhododendron simsii HOM05D003488 ORTHO05D004214 1.6e-27 127.5 134 49.3
Lj1P237T11 Lonicera japonica HOM05D003488 ORTHO05D004214 2.8e-27 126.7 209 39.7
SGA_v2.0_scaffold75G24751 Striga asiatica HOM05D003488 ORTHO05D004214 2.8e-27 126.7 134 49.3
AL2G25690 Arabidopsis lyrata HOM05D003488 ORTHO05D004214 4.7e-27 125.9 201 39.3
AT1G67190 Arabidopsis thaliana HOM05D003488 ORTHO05D004214 4.7e-27 125.9 201 39.3
RcHm_v2.0_Chr3g0473131 Rosa chinensis HOM05D003488 ORTHO05D004214 4.7e-27 125.9 138 47.8
MSTRG.5840 Avicennia marina HOM05D003488 ORTHO05D004214 6.1e-27 125.6 134 47.0
Carub.0002s1346 Capsella rubella HOM05D003488 ORTHO05D004214 6.1e-27 125.6 134 47.8
Glyma.11G183600 Glycine max HOM05D003488 ORTHO05D004214 6.1e-27 125.6 191 40.3
Potri.009G164200 Populus trichocarpa HOM05D003488 ORTHO05D004214 6.1e-27 125.6 138 46.4
Actinidia31274 Actinidia chinensis HOM05D003488 ORTHO05D004214 8.0e-27 125.2 134 49.3
VMungo1127G1058 Vigna mungo HOM05D003488 ORTHO05D004214 8.0e-27 125.2 191 39.8
FvH4_6g18580 Fragaria vesca HOM05D003488 ORTHO05D004214 1.8e-26 124.0 138 47.8
Potri.004G203300 Populus trichocarpa HOM05D003488 ORTHO05D004214 1.8e-26 124.0 206 38.3
Prupe.6G129400 Prunus persica HOM05D003488 ORTHO05D004214 1.8e-26 124.0 242 36.4
Rhsim01G0205200 Rhododendron simsii HOM05D003488 ORTHO05D004214 1.8e-26 124.0 138 46.4
CARHR059640 Cardamine hirsuta HOM05D003488 ORTHO05D004214 2.3e-26 123.6 201 38.8
Glyma.12G088900 Glycine max HOM05D003488 ORTHO05D004214 2.3e-26 123.6 191 40.8
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 2.3e-26 123.6 138 44.9
Oeu009221.1 Olea europaea HOM05D003488 ORTHO05D004214 3.0e-26 123.2 134 48.5
A07p33820 Brassica napus HOM05D003488 ORTHO05D004214 4.0e-26 122.9 201 38.3
AUR62006173 Chenopodium quinoa HOM05D003488 ORTHO05D004214 4.0e-26 122.9 206 36.9
TPR.G21934 Trifolium pratense HOM05D003488 ORTHO05D004214 4.0e-26 122.9 138 44.9
Thhalv10018615m.g Eutrema salsugineum HOM05D003488 ORTHO05D004214 5.2e-26 122.5 201 38.3
FAN05G0207 Fragaria x ananassa HOM05D003488 ORTHO05D004214 5.2e-26 122.5 134 47.8
FAN05G2045 Fragaria x ananassa HOM05D003488 ORTHO05D004214 5.2e-26 122.5 134 47.8
FAN09G1414 Fragaria x ananassa HOM05D003488 ORTHO05D004214 5.2e-26 122.5 134 47.8
Ca_19405_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 6.8e-26 122.1 191 39.8
Psat0s2993g0200 Pisum sativum HOM05D003488 ORTHO05D004214 6.8e-26 122.1 191 40.8
SGA_v2.0_scaffold13G06728 Striga asiatica HOM05D003488 ORTHO05D004214 6.8e-26 122.1 134 48.5
Haze_19602 Corylus avellana HOM05D003488 ORTHO05D004214 1.2e-25 121.3 120 51.7
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 1.2e-25 121.3 138 49.3
TPR.G17200 Trifolium pratense HOM05D003488 ORTHO05D004214 1.2e-25 121.3 191 40.3
BcaB03g15209 Brassica carinata HOM05D003488 ORTHO05D004214 1.5e-25 120.9 201 37.8
BcaC08g46148 Brassica carinata HOM05D003488 ORTHO05D004214 1.5e-25 120.9 201 37.8
C06p43110 Brassica napus HOM05D003488 ORTHO05D004214 1.5e-25 120.9 201 37.8
BraA07t31008Z Brassica rapa HOM05D003488 ORTHO05D004214 1.5e-25 120.9 201 37.8
Sp5g22120 Schrenkiella parvula HOM05D003488 ORTHO05D004214 2.0e-25 120.6 201 37.3
GSVIVG01036133001 Vitis vinifera HOM05D003488 ORTHO05D004214 2.0e-25 120.6 134 44.8
arahy.Tifrunner.gnm1.ann1.Q9WWUM Arachis hypogaea HOM05D003488 ORTHO05D004214 2.6e-25 120.2 191 39.8
Medtr4g053260 Medicago truncatula HOM05D003488 ORTHO05D004214 2.6e-25 120.2 205 38.5
Phvul.011G094000 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 2.6e-25 120.2 187 39.0
arahy.Tifrunner.gnm1.ann1.0J6PHG Arachis hypogaea HOM05D003488 ORTHO05D004214 3.4e-25 119.8 191 39.8
ClCG04G010010 Citrullus lanatus HOM05D003488 ORTHO05D004214 3.4e-25 119.8 126 49.2
Cc06_g05690 Coffea canephora HOM05D003488 ORTHO05D004214 3.4e-25 119.8 138 45.7
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 3.4e-25 119.8 200 38.0
Sc12g0004500 Simmondsia chinensis HOM05D003488 ORTHO05D004214 3.4e-25 119.8 208 38.0
Glyma.19G194600 Glycine max HOM05D003488 ORTHO05D004214 4.4e-25 119.4 138 45.7
BolC6t39128H Brassica oleracea HOM05D003488 ORTHO05D004214 5.7e-25 119.0 201 37.8
THA.LOC104800533 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 7.5e-25 118.6 115 52.2
Ah.15g095780 Amaranthus hybridus HOM05D003488 ORTHO05D004214 9.8e-25 118.2 132 45.5
Lj3g0011633 Lotus japonicus HOM05D003488 ORTHO05D004214 9.8e-25 118.2 134 45.5
CiPaw.13G136100 Carya illinoinensis HOM05D003488 ORTHO05D004214 1.3e-24 117.9 193 39.4
Ca_08999_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 1.3e-24 117.9 134 44.8
TPR.G11390 Trifolium pratense HOM05D003488 ORTHO05D004214 1.3e-24 117.9 138 42.8
Nitab4.5_0013628g0020 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.7e-24 117.5 142 43.0
Os01g0859600 Oryza sativa ssp. japonica HOM05D003488 ORTHO05D004214 1.7e-24 117.5 157 40.1
Lalb_Chr01g0004851 Lupinus albus HOM05D003488 ORTHO05D004214 2.8e-24 116.7 187 39.6
MBI17_g08366_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 2.8e-24 116.7 134 44.8
Cfa016600 Carpinus fangiana HOM05D003488 ORTHO05D004214 3.7e-24 116.3 288 30.2
VMungo1383G0237 Vigna mungo HOM05D003488 ORTHO05D004214 3.7e-24 116.3 138 44.2
Hund18755 Selenicereus undatus HOM05D003488 ORTHO05D004214 4.9e-24 115.9 182 39.0
ATR0776G025 Amborella trichopoda HOM05D003488 ORTHO05D004214 8.3e-24 115.2 134 42.5
Peaxi162Scf00003g00057 Petunia axillaris HOM05D003488 ORTHO05D004214 8.3e-24 115.2 142 42.3
PGR004G0231 Punica granatum HOM05D003488 ORTHO05D004214 1.4e-23 114.4 138 42.8
Manes.04G004000 Manihot esculenta HOM05D003488 ORTHO05D004214 2.4e-23 113.6 204 37.3
Manes.11G161600 Manihot esculenta HOM05D003488 ORTHO05D004214 2.4e-23 113.6 187 38.0
Medtr1g060040 Medicago truncatula HOM05D003488 ORTHO05D004214 2.4e-23 113.6 138 41.3
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 3.2e-23 113.2 134 45.5
Psat4g110920 Pisum sativum HOM05D003488 ORTHO05D004214 5.4e-23 112.5 138 41.3
Psat3g033640 Pisum sativum HOM05D003488 ORTHO05D004214 7.0e-23 112.1 134 41.8
CDE08G1419 Ceratophyllum demersum HOM05D003488 ORTHO05D004214 9.2e-23 111.7 163 41.7
Nitab4.5_0000202g0240 Nicotiana tabacum HOM05D003488 ORTHO05D004214 9.2e-23 111.7 123 49.6
Sc20g0006250 Simmondsia chinensis HOM05D003488 ORTHO05D004214 9.2e-23 111.7 137 43.1
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 1.2e-22 111.3 120 45.0
Lsat_1_v5_gn_6_38721 Lactuca sativa HOM05D003488 ORTHO05D004214 1.2e-22 111.3 137 44.5
Zm00001eb147200 Zea mays HOM05D003488 ORTHO05D004214 1.2e-22 111.3 139 41.7
HanXRQChr13g0397431 Helianthus annuus HOM05D003488 ORTHO05D004214 1.6e-22 110.9 209 37.3
SEGI_17169 Sequoiadendron giganteum HOM05D003488 ORTHO05D022332 2.7e-22 110.2 114 47.4
Sopen11g027050 Solanum pennellii HOM05D003488 ORTHO05D004214 2.7e-22 110.2 142 40.1
Psat6g013800 Pisum sativum HOM05D003488 ORTHO05D004214 4.5e-22 109.4 138 39.9
HanXRQChr02g0054781 Helianthus annuus HOM05D003488 ORTHO05D004214 5.9e-22 109.0 138 43.5
EL10Ac7g16924 Beta vulgaris HOM05D003488 ORTHO05D004214 7.8e-22 108.6 136 42.6
AUR62021589 Chenopodium quinoa HOM05D003488 ORTHO05D004214 7.8e-22 108.6 120 48.3
CiPaw.13G136000 Carya illinoinensis HOM05D003488 ORTHO05D004214 1.0e-21 108.2 136 42.6
THA.LOC104815726 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 1.0e-21 108.2 119 45.4
Ah.15g090910 Amaranthus hybridus HOM05D003488 ORTHO05D004214 1.7e-21 107.5 138 40.6
TPR.G19554 Trifolium pratense HOM05D003488 ORTHO05D004214 2.9e-21 106.7 114 45.6
Nitab4.5_0000755g0230 Nicotiana tabacum HOM05D003488 ORTHO05D004214 3.9e-21 106.3 134 41.0
arahy.Tifrunner.gnm1.ann1.D6PK9F Arachis hypogaea HOM05D003488 ORTHO05D004214 1.5e-20 104.4 187 37.4
AUR62009763 Chenopodium quinoa HOM05D003488 ORTHO05D004214 1.5e-20 104.4 179 37.4
AUR62028536 Chenopodium quinoa HOM05D003488 ORTHO05D004214 1.9e-20 104.0 120 47.5
Eucgr.B03854 Eucalyptus grandis HOM05D003488 ORTHO05D004214 2.5e-20 103.6 138 42.0
HPP92_003226 Vanilla planifolia HOM05D003488 ORTHO05D004214 3.3e-20 103.2 134 40.3
SEGI_39785 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 2.1e-19 100.5 134 40.3
AUR62036179 Chenopodium quinoa HOM05D003488 ORTHO05D022332 8.0e-19 98.6 117 45.3
CANSAT54G1372 Cannabis sativa HOM05D003488 ORTHO05D004214 1.0e-18 98.2 122 41.0
TAR636G2058 Trochodendron aralioides HOM05D000382 ORTHO05D000391 1.4e-18 97.8 162 38.3
TPR.G38236 Trifolium pratense HOM05D003488 ORTHO05D004214 2.3e-18 97.1 182 35.7
Eucgr.A01498 Eucalyptus grandis HOM05D003488 ORTHO05D004214 8.9e-18 95.1 198 35.9
Phvul.001G189500 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 1.5e-17 94.4 245 31.0
SEGI_25159 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 2.0e-17 94.0 112 42.9
ECA233G3236 Erigeron canadensis HOM05D003488 ORTHO05D004214 7.5e-17 92.0 129 42.6
CiPaw.13G136300 Carya illinoinensis HOM05D003488 ORTHO05D004214 2.9e-16 90.1 114 39.5
SalBow5G1330 Salvia bowleyana HOM05D003488 ORTHO05D004214 2.9e-16 90.1 163 39.3
FAN14G3815 Fragaria x ananassa HOM05D003488 ORTHO05D004214 5.4e-15 85.9 202 31.7
Dinv29477 Davidia involucrata HOM05D003488 ORTHO05D004214 9.2e-15 85.1 138 36.2
ClCG10G019020 Citrullus lanatus HOM05D003488 ORTHO05D022332 4.6e-14 82.8 57 68.4
Mapoly0037s0051 Marchantia polymorpha HOM05D003488 ORTHO05D004214 1.7e-13 80.9 136 34.6
PGR102G1638 Punica granatum HOM05D003488 ORTHO05D004214 2.3e-13 80.5 135 35.6
GSVIVG01033833001 Vitis vinifera HOM05D003488 ORTHO05D004214 1.1e-12 78.2 238 28.2
Pp3c25_4500 Physcomitrium patens HOM05D003488 ORTHO05D004214 5.6e-12 75.9 118 34.7
CiPaw.14G100300 Carya illinoinensis HOM05D003488 ORTHO05D004214 3.1e-10 70.1 126 34.9
CDE06G0950 Ceratophyllum demersum HOM05D003488 ORTHO05D004214 3.1e-10 70.1 116 35.3
PGR102G1861 Punica granatum HOM05D003488 ORTHO05D004214 4.0e-10 69.7 136 32.4
SalBow3G3938 Salvia bowleyana HOM05D003488 ORTHO05D004214 4.6e-06 56.2 112 33.9


User provided reference genes

Program Settings