Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 7.3e-178 627.1 314 100.0
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 2.7e-172 608.6 314 96.5
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 5.4e-165 584.3 314 93.0
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 3.7e-121 438.7 314 67.5
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 1.2e-119 433.7 310 67.4
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 1.5e-117 426.8 310 64.8
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 1.5e-117 426.8 314 66.2
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 3.2e-117 425.6 310 64.5
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 6.1e-116 421.4 314 63.4
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 1.4e-115 420.2 311 66.9
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 1.4e-115 420.2 317 63.7
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 1.2e-114 417.2 311 65.3
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 2.0e-114 416.4 312 64.1
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 3.4e-114 415.6 313 64.9
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 3.4e-114 415.6 244 86.1
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 5.7e-114 414.8 305 66.6
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 3.7e-113 412.1 313 62.9
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 8.3e-113 411.0 313 62.9
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 1.1e-112 410.6 310 63.2
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 1.1e-112 410.6 314 63.4
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 1.4e-112 410.2 311 65.0
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 2.4e-112 409.5 309 63.1
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 7.0e-112 407.9 314 64.6
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 2.0e-111 406.4 312 60.9
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 7.7e-111 404.4 310 62.3
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.0e-110 404.1 314 64.6
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 1.0e-110 404.1 309 63.8
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.3e-110 403.7 313 61.7
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 2.2e-110 402.9 314 61.5
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 5.0e-110 401.7 314 64.0
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 1.1e-109 400.6 312 59.9
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 1.5e-109 400.2 309 61.5
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 2.5e-109 399.4 307 61.6
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 2.5e-109 399.4 334 60.5
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 3.6e-108 395.6 307 64.5
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 4.7e-108 395.2 314 63.1
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 4.7e-108 395.2 307 63.2
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 1.8e-107 393.3 309 62.8
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 3.0e-107 392.5 307 61.2
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 4.0e-107 392.1 331 58.3
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 7.5e-106 387.9 307 60.6
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 6.3e-105 384.8 308 61.0
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 1.1e-104 384.0 311 61.1
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.4e-104 383.6 311 61.7
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 1.4e-104 383.6 314 61.1
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 4.1e-104 382.1 311 61.4
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 7.0e-104 381.3 307 60.6
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 4.5e-103 378.6 311 60.8
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 1.5e-101 373.6 303 60.1
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 1.5e-101 373.6 295 60.0
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 4.3e-101 372.1 305 60.3
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 4.3e-101 372.1 307 59.6
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 7.2e-101 371.3 307 59.6
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 2.8e-100 369.4 307 59.6
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 6.1e-100 368.2 304 59.5
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 1.0e-99 367.5 295 60.0
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 4.0e-99 365.5 307 59.3
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 6.8e-99 364.8 313 58.8
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 8.9e-99 364.4 307 57.3
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 1.5e-98 363.6 307 58.0
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 2.6e-98 362.8 308 60.4
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 2.6e-98 362.8 308 60.4
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 5.7e-98 361.7 307 58.6
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 9.8e-98 360.9 307 58.0
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 1.3e-97 360.5 313 55.6
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 1.3e-97 360.5 298 62.1
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 2.2e-97 359.8 308 60.1
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 3.7e-97 359.0 310 57.1
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 6.4e-97 358.2 320 56.9
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 1.1e-96 357.5 308 59.7
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 1.1e-96 357.5 310 58.1
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 1.8e-96 356.7 309 58.3
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 1.8e-96 356.7 270 67.8
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 1.2e-95 354.0 311 58.5
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 1.2e-95 354.0 308 59.4
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 5.0e-94 348.6 285 61.4
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 1.9e-93 346.7 309 56.0
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 9.5e-93 344.4 276 67.0
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 9.2e-88 327.8 311 53.4
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 9.2e-88 327.8 274 59.9
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 2.7e-87 326.2 237 63.3
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 3.0e-86 322.8 307 54.7
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 6.6e-86 321.6 224 68.3
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 1.2e-84 317.4 308 52.6
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 2.3e-83 313.2 309 52.8
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.2e-82 310.8 268 59.7
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 5.8e-82 308.5 322 51.9
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 9.8e-82 307.8 259 59.5
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 2.7e-79 299.7 317 50.2
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 1.1e-77 294.3 259 55.2
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 3.6e-76 289.3 244 59.0
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 2.3e-75 286.6 265 58.9
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 2.0e-74 283.5 288 53.8
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 4.4e-74 282.3 224 60.3
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 1.2e-71 274.2 312 45.5
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 8.6e-70 268.1 212 66.0
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 7.3e-69 265.0 264 54.2
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 1.2e-68 264.2 211 59.2
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 1.3e-62 244.2 311 44.1
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 6.9e-59 231.9 304 42.1
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 1.5e-58 230.7 226 52.2
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 4.4e-58 229.2 193 59.1
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 3.2e-56 223.0 154 64.9
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 2.1e-55 220.3 322 38.2
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 1.3e-54 217.6 310 41.9
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 3.1e-51 206.5 300 38.7
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 5.8e-50 202.2 228 46.5
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 4.6e-47 192.6 191 53.4
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.6e-44 184.1 155 58.1
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 1.3e-41 174.5 167 50.9
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 1.1e-37 161.4 230 36.5
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 7.4e-37 158.7 258 40.7
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 9.6e-37 158.3 164 54.3
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 9.6e-37 158.3 169 46.7
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 9.0e-35 151.8 154 50.0
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 1.9e-32 144.1 110 60.9
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 8.2e-28 128.6 75 70.7
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.4e-27 127.9 166 46.4
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 1.8e-27 127.5 89 66.3
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 7.7e-26 122.1 179 45.3
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 1.7e-25 120.9 142 47.2
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 2.5e-24 117.1 144 45.1
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.7e-20 104.4 74 63.5
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 4.8e-20 102.8 74 62.2
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 2.6e-18 97.1 118 40.7
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.0e-17 95.1 196 37.2
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 2.5e-16 90.5 143 40.6
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 2.3e-14 84.0 57 70.2
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 6.7e-14 82.4 70 47.1
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 3.2e-08 63.5 37 81.1


User provided reference genes

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