Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 2.4e-75 285.4 145 100.0
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 4.3e-72 274.6 147 95.2
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 4.4e-69 264.6 147 93.2
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 2.2e-52 209.1 146 73.3
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 6.4e-52 207.6 149 71.1
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 2.4e-51 205.7 147 73.5
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 3.5e-50 201.8 151 70.9
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 8.7e-49 197.2 154 68.2
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.1e-48 196.8 151 64.9
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.9e-48 196.1 151 64.2
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.9e-48 196.1 151 64.2
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 3.3e-48 195.3 150 69.3
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 3.3e-48 195.3 151 63.6
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 7.3e-48 194.1 152 69.1
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 9.6e-48 193.7 145 70.3
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 9.6e-48 193.7 142 71.1
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 1.6e-47 193.0 151 68.9
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 1.4e-46 189.9 149 69.8
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 1.8e-46 189.5 146 67.8
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 2.4e-46 189.1 152 67.8
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 4.0e-46 188.3 148 68.2
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 6.9e-46 187.6 156 67.3
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 1.2e-45 186.8 155 65.8
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 3.4e-45 185.3 152 65.8
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 3.4e-45 185.3 153 62.1
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 4.4e-45 184.9 152 67.1
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 5.8e-45 184.5 154 66.2
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 7.6e-45 184.1 147 67.3
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 1.3e-44 183.3 156 64.1
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 1.7e-44 183.0 155 63.9
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 2.2e-44 182.6 144 66.0
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 2.9e-44 182.2 151 64.9
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 4.9e-44 181.4 152 66.4
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 4.9e-44 181.4 144 67.4
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 4.9e-44 181.4 153 62.7
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 1.1e-43 180.3 149 64.4
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 4.2e-43 178.3 108 77.8
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 7.1e-43 177.6 147 65.3
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 9.3e-43 177.2 148 64.9
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 2.1e-42 176.0 144 63.9
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 2.7e-42 175.6 152 64.5
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 3.5e-42 175.3 146 65.1
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 6.0e-42 174.5 147 64.6
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 6.0e-42 174.5 147 64.6
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.7e-41 172.9 152 63.8
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 1.7e-41 172.9 149 63.1
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 2.5e-40 169.1 146 63.0
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 5.6e-40 167.9 159 61.6
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 2.8e-39 165.6 113 72.6
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.1e-38 163.7 160 59.4
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 1.8e-38 162.9 144 63.2
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 4.0e-38 161.8 130 63.1
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 4.0e-38 161.8 149 59.7
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 5.8e-37 157.9 138 64.5
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 2.2e-36 156.0 147 61.2
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.4e-35 153.3 152 59.2
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 4.2e-35 151.8 157 52.2
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 7.1e-35 151.0 147 55.8
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 9.3e-35 150.6 152 57.2
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 3.5e-34 148.7 152 57.9
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 1.3e-33 146.7 145 53.1
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 3.0e-33 145.6 150 56.0
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 3.9e-33 145.2 143 58.7
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 8.7e-33 144.1 145 53.1
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.1e-32 143.7 149 54.4
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 1.5e-32 143.3 146 54.1
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 1.5e-32 143.3 132 57.6
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 1.9e-32 142.9 144 54.9
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 4.3e-32 141.7 146 56.2
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 5.6e-32 141.4 144 54.2
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 9.6e-32 140.6 142 51.4
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 2.1e-31 139.4 147 49.7
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 2.1e-31 139.4 142 50.7
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 2.1e-31 139.4 146 55.5
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 2.8e-31 139.0 144 52.8
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 2.8e-31 139.0 108 64.8
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 1.1e-30 137.1 145 51.7
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 1.1e-30 137.1 139 54.0
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 1.1e-30 137.1 148 52.7
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 1.4e-30 136.7 146 51.4
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 1.4e-30 136.7 145 51.7
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 1.4e-30 136.7 145 51.7
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.8e-30 136.3 124 57.3
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 5.3e-30 134.8 132 58.3
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 6.9e-30 134.4 144 52.8
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 1.2e-29 133.7 141 51.8
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 1.2e-29 133.7 143 50.3
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 1.5e-29 133.3 143 51.0
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 2.0e-29 132.9 140 53.6
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 2.0e-29 132.9 155 52.9
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 2.0e-29 132.9 155 52.9
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 2.6e-29 132.5 149 49.7
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 7.6e-29 131.0 147 51.7
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 7.6e-29 131.0 158 50.0
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 9.9e-29 130.6 143 48.3
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 9.9e-29 130.6 135 53.3
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.3e-28 130.2 140 52.9
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 1.7e-28 129.8 144 47.9
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 2.9e-28 129.0 138 52.2
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 6.4e-28 127.9 158 53.2
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 1.4e-27 126.7 135 53.3
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 4.2e-27 125.2 105 60.0
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 4.6e-26 121.7 142 52.8
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 4.6e-26 121.7 131 51.1
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 6.0e-26 121.3 135 51.1
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 1.3e-25 120.2 126 56.3
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 8.7e-25 117.5 153 53.6
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 1.5e-24 116.7 143 46.2
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 1.3e-23 113.6 149 47.0
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 6.2e-23 111.3 133 50.4
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 4.9e-20 101.7 88 61.4
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 4.9e-20 101.7 85 65.9
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 8.4e-20 100.9 84 66.7
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 8.4e-20 100.9 84 66.7
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 8.7e-17 90.9 101 51.5
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 8.7e-17 90.9 134 44.0
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 2.2e-15 86.3 101 50.5
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 6.3e-15 84.7 101 49.5
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 6.3e-15 84.7 101 49.5
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 1.8e-14 83.2 134 38.1
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 4.1e-14 82.0 100 46.0
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 6.5e-12 74.7 70 50.0
Mapoly0058s0037 Marchantia polymorpha HOM05D006043 ORTHO05D007309 5.5e-11 71.6 110 40.0
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 1.2e-10 70.5 141 36.9
Nn1g08859 Nelumbo nucifera HOM05D006043 ORTHO05D007309 3.6e-10 68.9 76 56.6
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 3.0e-09 65.9 125 37.6
Pp3c23_8320 Physcomitrium patens HOM05D053615 ORTHO05D007309 3.1e-06 55.8 101 37.6


User provided reference genes

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