Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 1.6e-80 304.7 611 100.0
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 1.2e-43 182.2 126 81.7
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 3.8e-37 160.6 124 75.8
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 6.7e-18 96.7 102 57.8
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.8e-16 91.3 125 48.8
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 2.4e-15 88.2 125 45.6
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 4.1e-15 87.4 96 56.2
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.0e-14 85.1 124 45.2
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.0e-14 85.1 124 45.2
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 2.6e-14 84.7 132 44.7
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.4e-14 84.3 124 44.4
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 1.0e-13 82.8 98 50.0
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 5.0e-13 80.5 99 49.5
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 5.0e-13 80.5 124 42.7
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 6.5e-13 80.1 94 51.1
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 8.5e-13 79.7 101 47.5
VMungo0720G1050 Vigna mungo HOM05D013674 ORTHO05D004088 1.1e-12 79.3 82 56.1
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 1.4e-12 79.0 98 51.0
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 3.2e-12 77.8 104 50.0
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 3.2e-12 77.8 104 51.9
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 5.5e-12 77.0 89 52.8
Glyma.10G064400 Glycine max HOM05D013674 ORTHO05D006108 5.5e-12 77.0 84 57.1
BcaC02g11777 Brassica carinata HOM05D006485 ORTHO05D006108 9.4e-12 76.3 98 50.0
BolC4t22800H Brassica oleracea HOM05D006485 ORTHO05D006108 9.4e-12 76.3 98 50.0
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 1.6e-11 75.5 99 52.5
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 1.6e-11 75.5 100 49.0
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 2.1e-11 75.1 100 49.0
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 2.7e-11 74.7 98 51.0
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 2.7e-11 74.7 98 51.0
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 2.7e-11 74.7 100 51.0
Sed0018771 Sechium edule HOM05D006485 ORTHO05D006108 2.7e-11 74.7 78 59.0
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 3.6e-11 74.3 98 52.0
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 3.6e-11 74.3 100 49.0
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.6e-11 74.3 98 49.0
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 6.1e-11 73.6 98 50.0
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 1.0e-10 72.8 98 53.1
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 1.0e-10 72.8 98 51.0
CANSAT80G1413 Cannabis sativa HOM05D006485 ORTHO05D006108 1.8e-10 72.0 136 41.2
unitig_746.g26769 Utricularia gibba HOM05D006485 ORTHO05D006108 2.3e-10 71.6 101 45.5
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 3.0e-10 71.2 95 51.6
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 3.9e-10 70.9 93 51.6
GSVIVG01033739001 Vitis vinifera HOM05D006485 ORTHO05D006108 3.9e-10 70.9 96 52.1
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 6.7e-10 70.1 98 46.9
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 8.8e-10 69.7 104 47.1
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 1.1e-09 69.3 96 47.9
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 2.0e-09 68.6 102 45.1
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 2.0e-09 68.6 88 53.4
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 2.6e-09 68.2 98 49.0
arahy.Tifrunner.gnm1.ann1.DLQI02 Arachis hypogaea HOM05D013121 ORTHO05D015407 3.3e-09 67.8 108 42.6
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 3.3e-09 67.8 93 50.5
Gohir.A09G142800 Gossypium hirsutum HOM05D006485 ORTHO05D006108 3.3e-09 67.8 107 45.8
arahy.Tifrunner.gnm1.ann1.YET5HL Arachis hypogaea HOM05D013121 ORTHO05D015407 4.4e-09 67.4 114 40.4
Gorai.006G159500 Gossypium raimondii HOM05D006485 ORTHO05D006108 4.4e-09 67.4 114 44.7
Ca_08949_v3 Cicer arietinum L. HOM05D013121 ORTHO05D015407 5.7e-09 67.0 142 34.5
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 9.7e-09 66.2 100 47.0
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 1.3e-08 65.9 102 45.1
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 1.7e-08 65.5 99 44.4
CAN.G824.55 Capsicum annuum HOM05D006485 ORTHO05D006108 2.8e-08 64.7 101 41.6
Phvul.007G225200 Phaseolus vulgaris HOM05D013674 ORTHO05D006108 4.8e-08 63.9 76 50.0
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 8.2e-08 63.2 99 40.4
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 1.4e-07 62.4 92 42.4
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 1.8e-07 62.0 99 42.4
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 1.8e-07 62.0 99 42.4
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 2.4e-07 61.6 92 43.5
FAN03G0002 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.1e-07 61.2 72 44.4
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 4.1e-07 60.8 99 42.4
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 4.1e-07 60.8 97 41.2
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 5.3e-07 60.5 97 40.2
Lalb_Chr06g0172031 Lupinus albus HOM05D013674 ORTHO05D006108 5.3e-07 60.5 88 44.3
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 5.3e-07 60.5 104 37.5
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 5.3e-07 60.5 104 37.5
FAN13G1461 Fragaria x ananassa HOM05D006485 ORTHO05D006108 7.0e-07 60.1 72 44.4
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 7.0e-07 60.1 102 43.1
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 9.1e-07 59.7 100 41.0
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 1.2e-06 59.3 99 41.4
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 1.2e-06 59.3 99 41.4
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 1.2e-06 59.3 84 50.0
SHI27750 Sapria himalayana HOM05D006485 ORTHO05D006108 1.5e-06 58.9 95 44.2
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 2.6e-06 58.2 137 36.5
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 2.6e-06 58.2 91 38.5
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 3.5e-06 57.8 94 42.6
FAN21G1428 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.5e-06 57.8 65 46.2
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 4.5e-06 57.4 101 40.6
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 4.5e-06 57.4 98 38.8
TAR623G0376 Trochodendron aralioides HOM05D006485 ORTHO05D006108 4.5e-06 57.4 85 48.2
DCAR_020790 Daucus carota HOM05D006485 ORTHO05D006108 5.9e-06 57.0 51 58.8
FAN11G0239 Fragaria x ananassa HOM05D006485 ORTHO05D006108 5.9e-06 57.0 65 44.6
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 7.7e-06 56.6 42 61.9
Cfa016502 Carpinus fangiana HOM05D006485 ORTHO05D006108 7.7e-06 56.6 62 54.8


User provided reference genes

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