Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G036450 Cucumis sativus L. HOM05D007206 ORTHO05D009176 3.2e-95 351.7 167 100.0
MELO3C009409.2 Cucumis melo HOM05D007206 ORTHO05D009176 9.2e-95 350.1 167 99.4
ClCG10G019630 Citrullus lanatus HOM05D007206 ORTHO05D009176 8.6e-85 317.0 169 89.3
Sed0006266 Sechium edule HOM05D007206 ORTHO05D009176 1.1e-71 273.5 169 77.5
Sed0016601 Sechium edule HOM05D007206 ORTHO05D009176 1.9e-71 272.7 167 79.0
Haze_19480 Corylus avellana HOM05D007206 ORTHO05D009176 1.8e-61 239.6 161 65.8
QL07p041366 Quercus lobata HOM05D007206 ORTHO05D009176 3.0e-61 238.8 168 64.9
Hma1.2p1_0564F.1_g179170 Hydrangea macrophylla HOM05D007206 ORTHO05D009176 1.9e-60 236.1 168 63.1
Migut.J00478 Erythranthe guttata HOM05D007206 ORTHO05D009176 7.4e-60 234.2 165 64.2
SGA_v2.0_scaffold657G53380 Striga asiatica HOM05D007206 ORTHO05D009176 3.1e-58 228.8 167 61.7
Sabra06G0093700 Salix brachista HOM05D007206 ORTHO05D009176 7.6e-57 224.2 167 62.3
CiPaw.09G005300 Carya illinoinensis HOM05D007206 ORTHO05D009176 1.3e-56 223.4 138 71.0
Glyma.19G188400 Glycine max HOM05D007206 ORTHO05D009176 1.7e-56 223.0 155 61.3
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 2.2e-56 222.6 153 65.4
FAN05G5006 Fragaria x ananassa HOM05D007206 ORTHO05D009176 4.9e-56 221.5 143 71.3
FAN05G2314 Fragaria x ananassa HOM05D007206 ORTHO05D009176 8.4e-56 220.7 143 71.3
Manes.09G048990 Manihot esculenta HOM05D007206 ORTHO05D009176 1.4e-55 219.9 175 57.7
Cc06_g04800 Coffea canephora HOM05D007206 ORTHO05D009176 1.9e-55 219.5 175 58.3
Potri.006G119100 Populus trichocarpa HOM05D007206 ORTHO05D009176 1.9e-55 219.5 168 61.3
FvH4_6g17250 Fragaria vesca HOM05D007206 ORTHO05D009176 3.2e-55 218.8 143 71.3
RcHm_v2.0_Chr3g0471351 Rosa chinensis HOM05D007206 ORTHO05D009176 3.2e-55 218.8 160 66.9
Prupe.7G122800 Prunus persica HOM05D007206 ORTHO05D009176 7.1e-55 217.6 158 63.3
Oeu017000.1 Olea europaea HOM05D007206 ORTHO05D009176 2.1e-54 216.1 168 58.9
Actinidia32469 Actinidia chinensis HOM05D007206 ORTHO05D009176 2.7e-54 215.7 167 60.5
FAN14G2195 Fragaria x ananassa HOM05D007206 ORTHO05D009176 2.7e-54 215.7 143 70.6
SalBow3G1834 Salvia bowleyana HOM05D007206 ORTHO05D009176 4.6e-54 214.9 157 60.5
Lj1g0012469 Lotus japonicus HOM05D007206 ORTHO05D009176 7.9e-54 214.2 160 60.6
Glyma.03G188300 Glycine max HOM05D007206 ORTHO05D009176 1.0e-53 213.8 157 58.0
ECA233G5177 Erigeron canadensis HOM05D007206 ORTHO05D009176 2.3e-53 212.6 167 58.7
MD14G1096900 Malus domestica HOM05D007206 ORTHO05D009176 2.3e-53 212.6 137 69.3
VMungo1383G0088 Vigna mungo HOM05D007206 ORTHO05D009176 6.7e-53 211.1 159 56.0
HanXRQChr13g0400551 Helianthus annuus HOM05D007206 ORTHO05D009176 1.5e-52 209.9 138 60.9
Lalb_Chr25g0288781 Lupinus albus HOM05D007206 ORTHO05D009176 1.5e-52 209.9 165 56.4
Aqoxy1G01032 Aquilegia oxysepala HOM05D007206 ORTHO05D009176 4.3e-52 208.4 155 61.3
CAN.G1759.3 Capsicum annuum HOM05D007206 ORTHO05D009176 5.6e-52 208.0 140 65.7
Lsat_1_v5_gn_6_28201 Lactuca sativa HOM05D007206 ORTHO05D009176 5.6e-52 208.0 141 61.0
CSS0049694 Camellia sinensis var. sinensis HOM05D007206 ORTHO05D009176 2.1e-51 206.1 135 67.4
Sopen01g017760 Solanum pennellii HOM05D007206 ORTHO05D009176 2.1e-51 206.1 161 58.4
Phvul.001G183600 Phaseolus vulgaris HOM05D007206 ORTHO05D009176 2.8e-51 205.7 159 54.7
PGSC0003DMG400012983 Solanum tuberosum HOM05D007206 ORTHO05D009176 2.8e-51 205.7 168 56.5
Solyc09g008590.4 Solanum lycopersicum HOM05D007206 ORTHO05D009176 3.7e-51 205.3 168 57.1
TWI77G0103 Tripterygium wilfordii HOM05D007206 ORTHO05D009176 3.7e-51 205.3 164 57.9
DCAR_017648 Daucus carota HOM05D007206 ORTHO05D009176 8.2e-51 204.1 162 57.4
Ca_08938_v3 Cicer arietinum L. HOM05D007206 ORTHO05D009176 1.4e-50 203.4 166 56.6
Ca_30111_v3 Cicer arietinum L. HOM05D007206 ORTHO05D009176 1.4e-50 203.4 166 56.6
Hund01087 Selenicereus undatus HOM05D007206 ORTHO05D009176 1.4e-50 203.4 154 56.5
Lj2C124T14 Lonicera japonica HOM05D007206 ORTHO05D009176 3.1e-50 202.2 163 58.3
PSO063G5977 Papaver somniferum HOM05D007206 ORTHO05D009176 4.0e-50 201.8 168 56.5
TPR.G31671 Trifolium pratense HOM05D007206 ORTHO05D009176 4.0e-50 201.8 159 56.0
MD12G1102700 Malus domestica HOM05D007206 ORTHO05D009176 5.3e-50 201.4 139 65.5
MBI18_g24930_MAGBIO Magnolia biondii HOM05D007206 ORTHO05D009176 1.3e-48 196.8 143 60.1
Medtr7g102770 Medicago truncatula HOM05D007206 ORTHO05D009176 3.8e-48 195.3 132 62.9
ATR0580G453 Amborella trichopoda HOM05D007206 ORTHO05D009176 1.9e-47 193.0 144 60.4
Cpa.g.sc5.124 Carica papaya HOM05D007206 ORTHO05D009176 1.9e-47 193.0 167 53.9
Duzib093G2029 Durio zibethinus HOM05D007206 ORTHO05D009176 1.2e-46 190.3 170 52.4
Ciclev10006960m.g Citrus clementina HOM05D007206 ORTHO05D009176 1.6e-46 189.9 172 53.5
Eucgr.K02418 Eucalyptus grandis HOM05D007206 ORTHO05D009176 1.6e-46 189.9 157 55.4
Psat0s4599g0080 Pisum sativum HOM05D007206 ORTHO05D009176 1.6e-46 189.9 162 51.2
THA.LOC104826925 Tarenaya hassleriana HOM05D007206 ORTHO05D009176 6.0e-46 188.0 158 55.1
Thecc.05G075700 Theobroma cacao HOM05D007206 ORTHO05D009176 6.0e-46 188.0 172 54.1
C03p43430 Brassica napus HOM05D007206 ORTHO05D009176 8.7e-45 184.1 134 59.0
AT3G09925 Arabidopsis thaliana HOM05D007206 ORTHO05D009176 1.1e-44 183.7 158 53.8
Gohir.D01G129600 Gossypium hirsutum HOM05D007206 ORTHO05D009176 1.1e-44 183.7 159 54.7
BcaC01g04253 Brassica carinata HOM05D007206 ORTHO05D009176 1.5e-44 183.3 133 59.4
BolC3t16614H Brassica oleracea HOM05D007206 ORTHO05D009176 1.5e-44 183.3 133 59.4
COL.COLO4_22256 Corchorus olitorius HOM05D007206 ORTHO05D009176 1.9e-44 183.0 172 50.6
AL3G21200 Arabidopsis lyrata HOM05D007206 ORTHO05D009176 4.3e-44 181.8 158 55.1
BraA03t12750Z Brassica rapa HOM05D007206 ORTHO05D009176 4.3e-44 181.8 133 59.4
Aa31LG3G2410 Aethionema arabicum HOM05D007206 ORTHO05D009176 9.7e-44 180.6 160 53.8
Gorai.002G160400 Gossypium raimondii HOM05D007206 ORTHO05D009176 9.7e-44 180.6 167 51.5
Sc02g0001330 Simmondsia chinensis HOM05D007206 ORTHO05D009176 9.7e-44 180.6 140 55.7
Carub.0003s0903 Capsella rubella HOM05D007206 ORTHO05D009176 3.7e-43 178.7 133 57.9
CARHR084450 Cardamine hirsuta HOM05D007206 ORTHO05D009176 8.2e-43 177.6 133 57.9
Peaxi162Scf01195g00005 Petunia axillaris HOM05D007206 ORTHO05D009176 1.1e-42 177.2 159 51.6
Atru.chr8.1702 Acer truncatum HOM05D007206 ORTHO05D009176 1.8e-42 176.4 162 52.5
A03p35770 Brassica napus HOM05D007206 ORTHO05D009176 3.1e-42 175.6 134 59.0
Sp3g08280 Schrenkiella parvula HOM05D007206 ORTHO05D009176 5.3e-42 174.9 132 57.6
Thhalv10021649m.g Eutrema salsugineum HOM05D007206 ORTHO05D009176 1.5e-41 173.3 132 56.8
BcaB03g11581 Brassica carinata HOM05D007206 ORTHO05D009176 4.5e-41 171.8 133 55.6
C05p58110 Brassica napus HOM05D007206 ORTHO05D009176 2.2e-40 169.5 133 54.9
BolC5t34468H Brassica oleracea HOM05D007206 ORTHO05D009176 2.2e-40 169.5 133 54.9
A05p39080 Brassica napus HOM05D007206 ORTHO05D009176 6.5e-40 167.9 133 54.1
BraA05t22700Z Brassica rapa HOM05D007206 ORTHO05D009176 6.5e-40 167.9 133 54.1
HPP92_008498 Vanilla planifolia HOM05D007206 ORTHO05D009176 6.5e-40 167.9 169 49.7
Dinv35836 Davidia involucrata HOM05D007206 ORTHO05D009176 2.3e-37 159.5 107 66.4
CANSAT80G1624 Cannabis sativa HOM05D007206 ORTHO05D009176 3.0e-37 159.1 154 48.7
arahy.Tifrunner.gnm1.ann1.06CJ1U Arachis hypogaea HOM05D007206 ORTHO05D009176 3.3e-36 155.6 106 60.4
arahy.Tifrunner.gnm1.ann1.A01TPE Arachis hypogaea HOM05D007206 ORTHO05D009176 1.3e-35 153.7 106 60.4
AUR62043339 Chenopodium quinoa HOM05D007206 ORTHO05D009176 1.3e-35 153.7 161 45.3
EL10Ac9g22544 Beta vulgaris HOM05D007206 ORTHO05D009176 1.4e-34 150.2 133 51.1
AUR62022783 Chenopodium quinoa HOM05D007206 ORTHO05D009176 1.8e-34 149.8 154 44.8
DCAR_017650 Daucus carota HOM05D007206 ORTHO05D009176 5.1e-29 131.7 160 40.0
BcaC05g29720 Brassica carinata HOM05D007206 ORTHO05D009176 1.5e-28 130.2 115 49.6
Zm00001eb022730 Zea mays HOM05D007206 ORTHO05D009176 1.2e-25 120.6 170 39.4
FAN09G1747 Fragaria x ananassa HOM05D007206 ORTHO05D022624 1.5e-25 120.2 82 64.6
Eucgr.F02194 Eucalyptus grandis HOM05D007206 ORTHO05D009176 2.9e-24 115.9 120 48.3
PSO339G4243 Papaver somniferum HOM05D007206 ORTHO05D009176 6.5e-24 114.8 163 41.1
PSO063G3127 Papaver somniferum HOM05D007206 ORTHO05D009176 8.5e-24 114.4 139 43.2
GSVIVG01033715001 Vitis vinifera HOM05D007206 ORTHO05D009176 6.3e-19 98.2 82 57.3
GSVIVG01033719001 Vitis vinifera HOM05D007206 ORTHO05D009176 6.3e-19 98.2 82 57.3
Lalb_Chr01g0018521 Lupinus albus HOM05D007206 ORTHO05D009176 4.7e-14 82.0 55 63.6
ATR0174G015 Amborella trichopoda HOM05D005469 ORTHO05D001701 2.2e-11 73.2 143 32.2
Zm00001eb123470 Zea mays HOM05D005469 ORTHO05D001701 2.8e-11 72.8 135 32.6
CANSAT56G4151 Cannabis sativa HOM05D005469 ORTHO05D001701 3.7e-11 72.4 138 34.8
CANSAT56G3078 Cannabis sativa HOM05D005469 ORTHO05D001701 6.3e-11 71.6 138 34.8
Gohir.D10G250700 Gossypium hirsutum HOM05D005469 ORTHO05D001701 5.3e-10 68.6 135 34.8
Gorai.011G291100 Gossypium raimondii HOM05D005469 ORTHO05D001701 5.3e-10 68.6 135 34.8
Os01g0164300 Oryza sativa ssp. japonica HOM05D005469 ORTHO05D001701 7.0e-10 68.2 136 32.4
SGA_v2.0_scaffold44G16665 Striga asiatica HOM05D005469 ORTHO05D001701 7.0e-10 68.2 144 36.1
Duzib114G0491 Durio zibethinus HOM05D005469 ORTHO05D001701 1.6e-09 67.0 152 32.2
MBI03_g43893_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 2.7e-09 66.2 131 33.6
Os01g0164075 Oryza sativa ssp. japonica HOM05D005469 ORTHO05D001701 3.5e-09 65.9 135 33.3
SalBow3G1256 Salvia bowleyana HOM05D005469 ORTHO05D001701 5.9e-09 65.1 141 34.8
Sopen02g022890 Solanum pennellii HOM05D003009 ORTHO05D001701 5.9e-09 65.1 137 32.1
Eucgr.G03079 Eucalyptus grandis HOM05D005469 ORTHO05D001701 7.7e-09 64.7 140 31.4
HanXRQChr14g0459401 Helianthus annuus HOM05D005469 ORTHO05D001701 7.7e-09 64.7 140 31.4
Nitab4.5_0000058g0190 Nicotiana tabacum HOM05D005469 ORTHO05D001701 7.7e-09 64.7 132 34.1
PGSC0003DMG400030033 Solanum tuberosum HOM05D005469 ORTHO05D001701 7.7e-09 64.7 136 32.4
AagrBONN_evm.TU.Sc2ySwM_368.1639 Anthoceros agrestis HOM05D006293 ORTHO05D009176 1.0e-08 64.3 122 33.6
MBI03_g21447_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 1.0e-08 64.3 137 34.3
Carub.0004s1545 Capsella rubella HOM05D003009 ORTHO05D001701 1.3e-08 63.9 135 31.9
Cc02_g06130 Coffea canephora HOM05D005469 ORTHO05D001701 1.3e-08 63.9 139 33.1
HanXRQChr07g0203111 Helianthus annuus HOM05D005469 ORTHO05D001701 1.3e-08 63.9 140 32.1
CSS0028429 Camellia sinensis var. sinensis HOM05D005469 ORTHO05D001701 1.7e-08 63.5 166 31.9
Solyc02g078050.4 Solanum lycopersicum HOM05D003009 ORTHO05D001701 1.7e-08 63.5 137 32.1
Sopen06g016860 Solanum pennellii HOM05D005469 ORTHO05D001701 1.7e-08 63.5 136 32.4
Nitab4.5_0000666g0120 Nicotiana tabacum HOM05D005469 ORTHO05D001701 2.2e-08 63.2 132 33.3
ECA238G1751 Erigeron canadensis HOM05D005469 ORTHO05D001701 2.9e-08 62.8 143 30.1
Manes.10G009700 Manihot esculenta HOM05D005469 ORTHO05D001701 3.8e-08 62.4 141 31.2
Nitab4.5_0003391g0070 Nicotiana tabacum HOM05D000087 ORTHO05D000793 3.8e-08 62.4 133 33.1
QL08p063579 Quercus lobata HOM05D005469 ORTHO05D001701 3.8e-08 62.4 131 34.4
Sopen02g022900 Solanum pennellii HOM05D003009 ORTHO05D001701 3.8e-08 62.4 126 32.5
CAN.G1268.13 Capsicum annuum HOM05D005469 ORTHO05D001701 5.0e-08 62.0 133 31.6
Solyc05g052500.4 Solanum lycopersicum HOM05D000087 ORTHO05D000793 5.0e-08 62.0 132 32.6
Sopen05g031040 Solanum pennellii HOM05D005469 ORTHO05D001701 5.0e-08 62.0 132 32.6
FAN01G2198 Fragaria x ananassa HOM05D005469 ORTHO05D001701 6.5e-08 61.6 130 32.3
MD05G1338000 Malus domestica HOM05D003009 ORTHO05D001701 8.5e-08 61.2 130 31.5
ECA238G2582 Erigeron canadensis HOM05D005469 ORTHO05D001701 1.1e-07 60.8 142 28.9
Migut.F00654 Erythranthe guttata HOM05D005469 ORTHO05D001701 1.1e-07 60.8 136 30.9
PGSC0003DMG400027122 Solanum tuberosum HOM05D005469 ORTHO05D001701 1.1e-07 60.8 128 32.0
TAR636G2944 Trochodendron aralioides HOM05D000080 ORTHO05D000053 1.1e-07 60.8 84 39.3
Nitab4.5_0000789g0080 Nicotiana tabacum HOM05D005469 ORTHO05D001701 1.5e-07 60.5 133 32.3
DCAR_024812 Daucus carota HOM05D005469 ORTHO05D001701 1.9e-07 60.1 170 27.6
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.9e-07 60.1 126 33.3
Aqoxy1G01324 Aquilegia oxysepala HOM05D005469 ORTHO05D001701 2.5e-07 59.7 136 31.6
Sed0006317 Sechium edule HOM05D003009 ORTHO05D001701 2.5e-07 59.7 131 32.8
COL.COLO4_25530 Corchorus olitorius HOM05D005469 ORTHO05D001701 3.2e-07 59.3 134 32.8
Duzib106G0906 Durio zibethinus HOM05D005469 ORTHO05D001701 3.2e-07 59.3 144 32.6
Manes.07G132700 Manihot esculenta HOM05D005469 ORTHO05D001701 4.2e-07 58.9 135 31.1
PGSC0003DMG400029698 Solanum tuberosum HOM05D003009 ORTHO05D001701 4.2e-07 58.9 100 32.0
FvH4_7g24910 Fragaria vesca HOM05D005469 ORTHO05D001701 5.5e-07 58.5 130 31.5
PGR142G1835 Punica granatum HOM05D005469 ORTHO05D001701 5.5e-07 58.5 133 33.8
DCAR_011836 Daucus carota HOM05D005469 ORTHO05D001701 1.2e-06 57.4 142 31.7
MBI15_g40303_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 1.2e-06 57.4 131 31.3
TPR.G33986 Trifolium pratense HOM05D002284 ORTHO05D002427 1.2e-06 57.4 128 30.5
RcHm_v2.0_Chr1g0370791 Rosa chinensis HOM05D005469 ORTHO05D001701 1.6e-06 57.0 130 31.5
Lalb_Chr01g0018511 Lupinus albus HOM05D007206 ORTHO05D009176 2.1e-06 56.6 51 52.9
EL10Ac2g04878 Beta vulgaris HOM05D005469 ORTHO05D001701 2.7e-06 56.2 136 30.1
Nitab4.5_0001652g0140 Nicotiana tabacum HOM05D003009 ORTHO05D001701 2.7e-06 56.2 137 29.9
Lj8C63T7 Lonicera japonica HOM05D005469 ORTHO05D001701 3.6e-06 55.8 131 32.1
RcHm_v2.0_Chr1g0370801 Rosa chinensis HOM05D005469 ORTHO05D001701 3.6e-06 55.8 135 30.4
SMO133G0010 Selaginella moellendorffii HOM05D007206 ORTHO05D002427 3.6e-06 55.8 98 35.7


User provided reference genes

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