Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 1.8e-165 585.9 297 100.0
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 6.1e-150 534.3 299 91.6
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 1.7e-147 526.2 297 89.9
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 1.8e-125 453.0 298 79.9
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 5.6e-111 404.8 298 70.5
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 1.4e-109 400.2 297 69.4
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 1.7e-107 393.3 299 68.9
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 8.4e-107 391.0 299 69.2
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 2.4e-106 389.4 299 68.2
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 4.2e-106 388.7 299 68.6
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 7.1e-106 387.9 299 68.6
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 3.5e-105 385.6 292 68.5
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 1.3e-104 383.6 299 68.9
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 3.9e-104 382.1 296 66.9
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 5.1e-104 381.7 298 68.5
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 5.1e-104 381.7 298 68.5
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 8.7e-104 380.9 321 64.5
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 3.3e-103 379.0 243 76.5
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 2.8e-102 375.9 304 64.8
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 3.6e-102 375.6 299 67.2
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.7e-102 375.2 298 67.4
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.4e-101 372.9 298 67.4
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 5.3e-101 371.7 296 66.9
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 7.6e-100 367.9 290 68.3
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 7.6e-100 367.9 289 68.5
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 2.2e-99 366.3 297 65.3
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 1.9e-98 363.2 310 62.9
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 4.2e-98 362.1 305 63.0
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 4.2e-98 362.1 215 80.5
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 5.4e-98 361.7 308 62.3
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 7.1e-98 361.3 296 63.2
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 1.2e-97 360.5 306 64.4
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 2.1e-97 359.8 303 64.4
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 2.1e-97 359.8 296 63.2
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 2.7e-97 359.4 308 62.3
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 1.7e-96 356.7 306 63.1
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 3.9e-96 355.5 297 64.0
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 3.9e-96 355.5 306 61.4
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 6.6e-96 354.8 296 66.2
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 8.7e-96 354.4 306 63.7
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 1.5e-95 353.6 279 67.0
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 2.5e-95 352.8 300 63.7
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 3.3e-95 352.4 283 65.7
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 3.3e-95 352.4 296 65.2
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 9.6e-95 350.9 241 73.0
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 1.6e-94 350.1 294 65.0
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 2.1e-94 349.7 270 67.4
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 2.8e-94 349.4 295 62.4
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 3.6e-94 349.0 300 62.7
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 1.1e-93 347.4 301 62.8
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 1.4e-93 347.1 225 75.6
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 1.8e-93 346.7 297 62.3
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 1.8e-93 346.7 304 61.2
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.8e-93 346.7 287 64.8
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 1.8e-93 346.7 292 62.3
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 4.0e-93 345.5 228 74.6
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 5.3e-93 345.1 289 62.3
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 9.0e-93 344.4 298 61.7
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 9.0e-93 344.4 236 72.5
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 9.0e-93 344.4 298 64.1
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 2.0e-92 343.2 234 73.5
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 5.8e-92 341.7 302 61.9
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 5.8e-92 341.7 302 61.9
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.7e-91 340.1 217 74.7
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 1.7e-91 340.1 241 71.0
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 1.7e-91 340.1 301 61.8
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 1.7e-91 340.1 300 64.0
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 2.2e-91 339.7 230 73.0
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 4.9e-91 338.6 235 71.1
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 6.4e-91 338.2 297 63.3
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 8.4e-91 337.8 254 68.1
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 8.4e-91 337.8 254 68.1
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 4.2e-90 335.5 226 73.5
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 4.2e-90 335.5 286 62.6
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 7.1e-90 334.7 217 74.2
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 3.5e-89 332.4 216 73.1
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 6.0e-89 331.6 225 70.2
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 2.3e-88 329.7 293 61.4
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 3.9e-88 328.9 284 60.9
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 6.7e-88 328.2 322 58.7
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 1.1e-87 327.4 257 67.3
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 1.9e-87 326.6 294 61.6
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.9e-87 326.6 322 57.5
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.3e-86 323.9 190 80.5
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 3.7e-86 322.4 226 70.4
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 6.9e-85 318.2 261 62.8
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 1.2e-84 317.4 297 59.6
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 7.6e-84 314.7 211 69.2
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 1.3e-83 313.9 212 70.8
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 8.7e-80 301.2 227 67.4
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 3.0e-72 276.2 217 60.4
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 1.3e-70 270.8 221 58.4
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 4.1e-69 265.8 244 59.0
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 1.1e-66 257.7 213 57.3
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.2e-62 243.4 217 56.7
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 1.3e-59 234.2 157 73.2
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 1.1e-58 231.1 226 59.7
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 9.4e-58 228.0 218 59.6
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 2.7e-57 226.5 183 65.0
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 1.4e-56 224.2 176 66.5
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.8e-56 223.8 241 49.4
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 4.8e-54 215.7 219 48.4
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 5.9e-52 208.8 191 51.3
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 3.6e-49 199.5 155 65.2
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 6.1e-49 198.7 143 69.2
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 4.7e-41 172.6 117 70.9
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.0e-40 171.4 156 59.0
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.8e-40 170.6 123 69.9
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 9.7e-39 164.9 105 73.3
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.5e-31 141.0 78 80.8
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.7e-30 137.5 71 90.1
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.7e-30 137.5 71 90.1
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 1.1e-21 108.2 102 60.8
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 6.6e-19 99.0 224 29.0
CsaV3_7G026110 Cucumis sativus L. HOM05D006384 ORTHO05D007917 4.3e-18 96.3 106 56.6
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 3.6e-17 93.2 67 77.6
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 1.1e-13 81.6 85 51.8
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 9.5e-10 68.6 62 62.9
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 1.2e-09 68.2 49 69.4
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 6.2e-09 65.9 46 65.2
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 1.8e-08 64.3 262 22.9
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 2.3e-08 63.9 124 27.4
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 1.5e-07 61.2 43 58.1
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 2.2e-06 57.4 234 22.6
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 2.9e-06 57.0 243 23.0
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 3.7e-06 56.6 271 21.4


User provided reference genes

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