Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.0e-172 610.1 350 100.0
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 9.7e-155 550.4 351 92.6
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.1e-149 532.7 351 84.0
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.7e-122 443.4 348 73.6
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 3.1e-116 422.5 350 71.4
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 3.5e-80 302.8 354 57.6
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 1.3e-66 257.7 358 48.3
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 3.8e-66 256.1 351 52.1
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 4.2e-65 252.7 357 47.1
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 2.3e-63 246.9 345 49.9
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 4.8e-61 239.2 357 45.9
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 2.0e-59 233.8 366 50.8
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 2.6e-59 233.4 348 54.6
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 7.7e-59 231.9 349 46.1
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.9e-58 229.9 341 54.3
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 3.8e-58 229.6 326 54.0
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 5.0e-58 229.2 343 54.5
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 6.5e-58 228.8 340 48.2
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 1.1e-57 228.0 343 54.5
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.1e-57 228.0 345 50.1
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.4e-57 227.6 343 54.2
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.2e-57 226.1 345 50.4
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.6e-56 224.2 357 45.7
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.8e-55 220.7 346 48.6
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 3.9e-55 219.5 367 46.9
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.1e-54 218.0 343 45.5
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 3.3e-54 216.5 348 46.0
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 5.7e-54 215.7 357 42.6
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-53 214.2 346 44.5
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 5.3e-52 209.1 347 47.0
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 9.1e-52 208.4 360 43.9
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 3.4e-51 206.5 340 44.4
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.7e-50 204.1 353 45.9
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 6.5e-50 202.2 344 43.6
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.5e-49 200.3 356 45.2
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.2e-49 199.9 341 43.7
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 4.2e-49 199.5 348 42.8
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 7.2e-49 198.7 363 41.3
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 1.2e-48 198.0 350 42.3
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 2.7e-48 196.8 341 43.1
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.0e-47 194.9 341 42.2
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 6.7e-47 192.2 350 43.1
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 9.7e-46 188.3 342 42.1
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.1e-44 184.9 347 41.5
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 9.1e-44 181.8 356 41.6
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.2e-43 181.4 329 41.0
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 3.5e-43 179.9 351 39.9
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 5.0e-42 176.0 356 42.4
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 6.5e-42 175.6 343 40.5
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 3.2e-41 173.3 339 40.4
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 7.2e-41 172.2 348 37.9
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 9.4e-41 171.8 338 39.9
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.2e-40 171.4 350 38.0
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 1.6e-40 171.0 370 38.9
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 2.1e-40 170.6 333 45.0
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 2.7e-40 170.2 329 38.9
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.0e-39 168.3 367 36.0
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 5.2e-39 166.0 325 37.2
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 6.7e-39 165.6 346 39.6
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.1e-38 164.9 351 39.6
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-38 164.5 221 48.0
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-38 164.5 221 48.0
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-38 163.3 221 47.5
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-38 163.3 221 47.5
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-38 163.3 221 47.5
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 7.4e-38 162.2 354 39.5
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 7.4e-38 162.2 221 47.5
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 7.4e-38 162.2 221 47.5
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 1.3e-37 161.4 345 36.2
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 1.7e-37 161.0 353 39.1
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 1.1e-36 158.3 335 40.3
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 2.4e-36 157.1 352 38.1
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 3.1e-36 156.8 326 38.3
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 4.1e-36 156.4 355 39.7
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 4.1e-36 156.4 331 40.2
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 4.1e-36 156.4 347 38.9
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 7.0e-36 155.6 347 38.0
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.2e-35 154.8 349 42.7
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.2e-35 154.8 377 36.6
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 2.0e-35 154.1 331 38.7
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 2.6e-35 153.7 360 36.7
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 2.6e-35 153.7 355 37.7
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 5.9e-35 152.5 353 40.8
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.9e-33 147.5 349 37.0
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 2.5e-33 147.1 360 37.8
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 1.6e-32 144.4 325 38.2
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 3.6e-32 143.3 404 37.9
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.8e-31 141.0 343 36.4
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 6.8e-31 139.0 327 34.3
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 9.7e-30 135.2 348 37.9
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 9.7e-30 135.2 137 60.6
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 1.3e-29 134.8 362 34.5
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 8.3e-29 132.1 198 46.5
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-28 131.7 198 46.5
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.4e-28 131.3 153 56.2
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.8e-28 131.0 331 38.1
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 4.1e-28 129.8 346 34.7
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 9.1e-28 128.6 356 32.9
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 1.2e-27 128.3 356 39.0
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 1.6e-27 127.9 356 39.0
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 1.0e-26 125.2 343 31.8
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 2.2e-26 124.0 198 45.5
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.9e-26 123.6 249 41.4
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.8e-26 123.2 329 35.6
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 6.5e-26 122.5 356 39.0
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 6.5e-26 122.5 346 35.3
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.5e-25 121.3 343 35.6
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.5e-25 121.3 353 35.7
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 1.9e-25 120.9 363 36.6
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 3.2e-25 120.2 364 37.6
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 5.5e-25 119.4 362 37.8
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 5.5e-25 119.4 88 76.1
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 5.5e-25 119.4 342 36.0
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 7.2e-25 119.0 343 37.0
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 9.4e-25 118.6 335 35.8
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.2e-24 118.2 328 34.5
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.2e-24 118.2 196 44.4
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.6e-24 117.9 347 34.0
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 2.1e-24 117.5 319 36.1
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 8.0e-24 115.5 228 39.9
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 8.0e-24 115.5 228 39.9
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.0e-23 115.2 228 39.9
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 1.4e-23 114.8 345 30.7
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.8e-23 114.4 334 37.1
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 2.3e-23 114.0 343 34.1
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 6.8e-23 112.5 328 33.5
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 2.0e-22 110.9 325 33.8
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 4.4e-22 109.8 334 33.5
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 9.8e-22 108.6 438 33.1
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 1.7e-21 107.8 347 33.7
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 2.2e-21 107.5 254 39.4
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 8.3e-21 105.5 136 49.3
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 1.4e-20 104.8 345 30.4
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 4.1e-20 103.2 223 35.4
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.2e-19 101.7 226 38.1
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.2e-19 101.7 300 34.7
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.5e-19 100.1 323 35.6
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 3.5e-19 100.1 130 53.1
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 4.5e-19 99.8 74 78.4
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 7.7e-19 99.0 236 36.9
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 7.7e-19 99.0 343 32.1
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 5.0e-18 96.3 320 29.1
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 1.0e-15 88.6 230 37.0
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 1.4e-15 88.2 183 35.0
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.5e-14 84.7 341 29.3
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.3e-13 81.6 290 33.8
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.4e-12 78.2 125 43.2
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 4.1e-12 76.6 254 32.7
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 1.2e-11 75.1 337 30.6
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 7.8e-11 72.4 308 29.9
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 7.8e-11 72.4 286 37.1
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 7.8e-11 72.4 337 29.7
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 6.6e-10 69.3 229 31.4
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 2.8e-08 63.9 282 33.7
MBI05_g41566_MAGBIO Magnolia biondii HOM05D060308 ORTHO05D004928 1.0e-07 62.0 155 32.3
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 1.4e-07 61.6 231 29.9
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 4.0e-07 60.1 350 27.4
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.5e-06 58.2 84 48.8
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 2.6e-06 57.4 296 30.1
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.4e-06 57.0 35 71.4


User provided reference genes

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