Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G035660 Cucumis sativus L. HOM05D007360 ORTHO05D008235 6.5e-249 863.6 441 100.0
ClCG10G020460 Citrullus lanatus HOM05D007360 ORTHO05D008235 1.7e-209 732.6 450 84.4
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 1.5e-200 703.0 397 92.7
Sed0020725 Sechium edule HOM05D007360 ORTHO05D008235 1.9e-115 420.2 318 74.8
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 5.4e-86 322.4 448 46.9
Haze_20630 Corylus avellana HOM05D007360 ORTHO05D008235 7.8e-85 318.5 469 45.8
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 1.7e-84 317.4 467 45.6
Cpa.g.sc174.13 Carica papaya HOM05D007360 ORTHO05D008235 2.3e-84 317.0 450 47.3
Dinv35727 Davidia involucrata HOM05D007360 ORTHO05D008235 1.1e-83 314.7 466 47.4
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 4.0e-81 306.2 448 47.5
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 8.4e-79 298.5 505 42.8
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 4.2e-78 296.2 449 47.0
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 4.6e-77 292.7 447 45.9
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 1.5e-75 287.7 459 44.7
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 3.1e-73 280.0 457 45.3
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 1.2e-72 278.1 443 43.6
Atru.chr8.1896 Acer truncatum HOM05D007360 ORTHO05D008235 2.6e-72 276.9 445 46.7
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 4.5e-72 276.2 502 40.4
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 5.8e-72 275.8 448 44.2
Duzib128G1437 Durio zibethinus HOM05D007360 ORTHO05D008235 1.7e-71 274.2 446 44.4
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 6.4e-71 272.3 454 43.6
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 1.2e-69 268.1 450 42.4
Hma1.2p1_0111F.1_g053990 Hydrangea macrophylla HOM05D007360 ORTHO05D008235 2.1e-69 267.3 424 45.5
CANSAT80G2624 Cannabis sativa HOM05D007360 ORTHO05D008235 1.8e-68 264.2 445 42.9
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 3.3e-67 260.0 459 41.6
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 3.7e-66 256.5 485 40.4
Nitab4.5_0006156g0020 Nicotiana tabacum HOM05D007360 ORTHO05D008235 1.2e-64 251.5 472 41.3
Manes.08G004115 Manihot esculenta HOM05D007360 ORTHO05D008235 2.0e-64 250.8 438 43.4
Peaxi162Scf00005g04017 Petunia axillaris HOM05D007360 ORTHO05D008235 2.6e-64 250.4 454 43.4
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 2.2e-63 247.3 499 40.3
Nitab4.5_0000669g0130 Nicotiana tabacum HOM05D007360 ORTHO05D008235 2.9e-63 246.9 473 40.8
Solyc09g007460.4 Solanum lycopersicum HOM05D007360 ORTHO05D008235 3.8e-63 246.5 498 39.8
Gohir.D04G115000 Gossypium hirsutum HOM05D007360 ORTHO05D008235 6.5e-63 245.7 448 41.1
Gorai.009G419600 Gossypium raimondii HOM05D007360 ORTHO05D008235 1.4e-62 244.6 448 41.1
Manes.12G045236 Manihot esculenta HOM05D007360 ORTHO05D008235 1.4e-62 244.6 418 43.1
Gohir.A04G075900 Gossypium hirsutum HOM05D007360 ORTHO05D008235 1.9e-62 244.2 449 41.2
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 7.1e-62 242.3 495 39.0
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 2.1e-61 240.7 497 39.2
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 4.6e-61 239.6 411 43.6
Oeu060091.1 Olea europaea HOM05D007360 ORTHO05D008235 1.9e-59 234.2 420 43.1
FAN02G3036 Fragaria x ananassa HOM05D007360 ORTHO05D008235 4.3e-59 233.0 466 39.3
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 3.7e-58 229.9 411 42.3
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 6.2e-58 229.2 416 42.1
Manes.08G004904 Manihot esculenta HOM05D007360 ORTHO05D008235 1.8e-57 227.6 397 41.6
Manes.08G004112 Manihot esculenta HOM05D007360 ORTHO05D008235 2.4e-57 227.3 428 41.4
Manes.08G004132 Manihot esculenta HOM05D007360 ORTHO05D008235 5.3e-57 226.1 439 41.0
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 5.3e-57 226.1 440 40.2
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 9.0e-57 225.3 423 40.9
Cc06_g03670 Coffea canephora HOM05D007360 ORTHO05D008235 1.5e-56 224.6 472 37.5
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 1.0e-55 221.9 250 54.8
Glyma.13G137900 Glycine max HOM05D007360 ORTHO05D008235 1.3e-55 221.5 452 38.7
Manes.08G014114 Manihot esculenta HOM05D007360 ORTHO05D008235 1.7e-55 221.1 416 40.4
FAN05G5130 Fragaria x ananassa HOM05D007360 ORTHO05D008235 3.8e-55 219.9 461 39.3
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 6.5e-55 219.2 438 39.5
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 1.4e-54 218.0 449 38.8
Manes.08G004103 Manihot esculenta HOM05D007360 ORTHO05D008235 2.5e-54 217.2 438 39.5
Manes.05G197400 Manihot esculenta HOM05D007360 ORTHO05D008235 1.6e-53 214.5 409 40.8
Phvul.007G164700 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 1.6e-53 214.5 451 38.4
Manes.08G004125 Manihot esculenta HOM05D007360 ORTHO05D008235 2.7e-53 213.8 419 39.9
Glyma.10G050400 Glycine max HOM05D007360 ORTHO05D008235 1.5e-51 208.0 449 35.9
Manes.08G004118 Manihot esculenta HOM05D007360 ORTHO05D008235 1.5e-51 208.0 444 38.5
Manes.08G004107 Manihot esculenta HOM05D007360 ORTHO05D008235 1.9e-51 207.6 439 38.0
AT3G09730 Arabidopsis thaliana HOM05D007360 ORTHO05D008235 3.3e-51 206.8 449 37.6
THA.LOC104816327 Tarenaya hassleriana HOM05D007360 ORTHO05D008235 3.3e-51 206.8 456 38.2
Manes.08G004130 Manihot esculenta HOM05D007360 ORTHO05D008235 5.7e-51 206.1 386 40.9
Thhalv10020860m.g Eutrema salsugineum HOM05D007360 ORTHO05D008235 4.8e-50 203.0 446 39.5
BolC1t05436H Brassica oleracea HOM05D007360 ORTHO05D008235 8.2e-50 202.2 448 39.5
Sabra06G0102600 Salix brachista HOM05D007360 ORTHO05D008235 1.8e-49 201.1 441 38.5
Ah.08g211880 Amaranthus hybridus HOM05D007360 ORTHO05D008235 4.1e-49 199.9 300 45.7
AL3G20950 Arabidopsis lyrata HOM05D007360 ORTHO05D008235 4.1e-49 199.9 448 39.1
Sopen00g009140 Solanum pennellii HOM05D007360 ORTHO05D008235 5.3e-49 199.5 270 48.9
Carub.0003s0882 Capsella rubella HOM05D007360 ORTHO05D008235 9.0e-49 198.7 451 38.4
Sp3g08070 Schrenkiella parvula HOM05D007360 ORTHO05D008235 1.5e-48 198.0 455 37.4
DCAR_020845 Daucus carota HOM05D007360 ORTHO05D008235 5.5e-46 189.5 401 38.2
BraA01t04285Z Brassica rapa HOM05D007360 ORTHO05D008235 5.1e-44 183.0 446 38.1
ECA233G0563 Erigeron canadensis HOM05D007360 ORTHO05D008235 1.3e-42 178.3 412 36.9
A01p42170 Brassica napus HOM05D007360 ORTHO05D008235 3.7e-42 176.8 444 38.1
Lalb_Chr02g0156301 Lupinus albus HOM05D007360 ORTHO05D008235 4.8e-42 176.4 299 40.8
MSTRG.10303 Avicennia marina HOM05D007360 ORTHO05D008235 1.4e-41 174.9 334 41.3
CARHR084150 Cardamine hirsuta HOM05D007360 ORTHO05D008235 1.8e-41 174.5 448 35.5
Lj1g0018826 Lotus japonicus HOM05D007360 ORTHO05D008235 2.6e-40 170.6 258 41.9
MD04G1105400 Malus domestica HOM05D007360 ORTHO05D008235 7.7e-40 169.1 233 47.2
Lalb_Chr21g0314721 Lupinus albus HOM05D007360 ORTHO05D008235 2.9e-39 167.2 461 33.4
CSS0042376 Camellia sinensis var. sinensis HOM05D007360 ORTHO05D008235 1.9e-38 164.5 534 31.6
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 1.2e-37 161.8 307 40.1
Manes.08G004119 Manihot esculenta HOM05D007360 ORTHO05D008235 2.1e-37 161.0 297 42.4
VMungo0720G0507 Vigna mungo HOM05D007360 ORTHO05D008235 3.9e-36 156.8 258 43.4
Manes.05G196900 Manihot esculenta HOM05D007360 ORTHO05D008235 5.1e-36 156.4 245 40.8
Aqoxy4G03227 Aquilegia oxysepala HOM05D007360 ORTHO05D008235 9.7e-35 152.1 350 36.9
Aa31LG3G2160 Aethionema arabicum HOM05D007360 ORTHO05D008235 1.2e-29 135.2 360 35.3
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 2.0e-24 117.9 106 59.4
HanXRQChr02g0051971 Helianthus annuus HOM05D007360 ORTHO05D008235 2.9e-23 114.0 303 36.0
MD12G1122600 Malus domestica HOM05D007360 ORTHO05D008235 2.7e-21 107.5 126 54.0
Phvul.001G175350 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 4.4e-19 100.1 240 33.8
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 2.5e-14 84.3 296 29.4
Hund20189 Selenicereus undatus HOM05D007360 ORTHO05D008235 3.6e-13 80.5 83 50.6
SEGI_31561 Sequoiadendron giganteum HOM05D007360 ORTHO05D008235 1.2e-11 75.5 312 26.6
Actinidia22292 Actinidia chinensis HOM05D005497 ORTHO05D006733 3.7e-10 70.5 334 26.0
HanXRQChr02g0051981 Helianthus annuus HOM05D007360 ORTHO05D008235 8.3e-10 69.3 122 40.2
Manes.09G079705 Manihot esculenta HOM05D007360 ORTHO05D008235 1.1e-09 68.9 51 70.6
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 1.6e-08 65.1 358 26.0
FAN15G1151 Fragaria x ananassa HOM05D005497 ORTHO05D006733 5.9e-08 63.2 219 27.9
Pp3c4_1590 Physcomitrium patens HOM05D018912 ORTHO05D021275 7.7e-08 62.8 251 26.3
Ciclev10008815m.g Citrus clementina HOM05D005497 ORTHO05D006733 1.7e-07 61.6 235 27.7
Pp3c12_23920 Physcomitrium patens HOM05D018912 ORTHO05D021275 1.7e-07 61.6 254 27.6
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 2.3e-07 61.2 73 43.8
ClCG05G016330 Citrullus lanatus HOM05D005497 ORTHO05D006733 2.9e-07 60.8 263 24.7
Actinidia04644 Actinidia chinensis HOM05D007360 ORTHO05D008235 3.8e-07 60.5 64 48.4
Actinidia33720 Actinidia chinensis HOM05D007360 ORTHO05D008235 3.8e-07 60.5 64 48.4
Actinidia28468 Actinidia chinensis HOM05D007360 ORTHO05D008235 5.0e-07 60.1 60 50.0
Haze_21422 Corylus avellana HOM05D005497 ORTHO05D006733 6.6e-07 59.7 302 25.8
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 6.6e-07 59.7 233 25.8
RcHm_v2.0_Chr6g0299451 Rosa chinensis HOM05D005497 ORTHO05D006733 1.1e-06 58.9 227 29.5
Hma1.2p1_1284F.1_g272900 Hydrangea macrophylla HOM05D005497 ORTHO05D006733 1.5e-06 58.5 244 24.2
Nitab4.5_0002964g0010 Nicotiana tabacum HOM05D005497 ORTHO05D006733 1.5e-06 58.5 237 27.4
Sabra18G0021900 Salix brachista HOM05D005497 ORTHO05D006733 1.5e-06 58.5 267 28.1
TAR625G1494 Trochodendron aralioides HOM05D005497 ORTHO05D006733 1.9e-06 58.2 320 25.6
Pp3c3_35360 Physcomitrium patens HOM05D018912 ORTHO05D021275 2.5e-06 57.8 285 26.0
TWI32G0158 Tripterygium wilfordii HOM05D005497 ORTHO05D006733 2.5e-06 57.8 250 26.4
FvH4_2g41090 Fragaria vesca HOM05D005497 ORTHO05D006733 3.3e-06 57.4 289 26.3
AL7G20200 Arabidopsis lyrata HOM05D005497 ORTHO05D006733 4.3e-06 57.0 277 27.4
Manes.16G129200 Manihot esculenta HOM05D005497 ORTHO05D006733 4.3e-06 57.0 333 23.4
A02p00730 Brassica napus HOM05D005497 ORTHO05D006733 7.3e-06 56.2 255 25.5
BraA02t05058Z Brassica rapa HOM05D005497 ORTHO05D006733 7.3e-06 56.2 255 25.5
Oeu030218.3 Olea europaea HOM05D005497 ORTHO05D006733 7.3e-06 56.2 237 27.0
SMO116G0351 Selaginella moellendorffii HOM05D005497 ORTHO05D006733 9.5e-06 55.8 193 32.6
Sopen02g018670 Solanum pennellii HOM05D005497 ORTHO05D006733 9.5e-06 55.8 257 26.5


User provided reference genes

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