Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.9e-128 462.6 244 100.0
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.6e-111 406.4 237 90.3
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.2e-84 316.2 205 84.9
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.7e-73 280.0 212 75.0
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.8e-70 270.0 207 67.6
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 2.0e-69 266.5 205 71.2
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 4.4e-69 265.4 208 72.1
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 9.7e-69 264.2 210 71.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.3e-68 263.8 209 70.3
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.8e-67 260.0 205 65.9
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.4e-67 259.6 210 68.1
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 3.1e-67 259.2 206 68.0
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 3.1e-67 259.2 211 69.7
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 4.1e-67 258.8 211 69.7
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 9.1e-67 257.7 210 71.0
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 9.1e-67 257.7 210 71.0
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-66 257.3 210 71.0
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.5e-66 256.9 209 66.5
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 3.4e-66 255.8 210 68.1
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 8.5e-65 251.1 210 68.6
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.4e-64 250.4 208 69.2
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.9e-64 250.0 214 60.3
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.5e-64 249.6 205 59.5
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 5.5e-64 248.4 205 59.5
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.2e-64 248.1 205 67.3
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 9.4e-64 247.7 205 59.0
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 9.4e-64 247.7 205 64.9
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.6e-63 246.9 206 62.6
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.6e-63 246.9 205 66.8
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.6e-63 246.9 205 66.8
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.7e-63 246.1 208 61.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.7e-63 246.1 208 61.1
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 6.1e-63 245.0 206 59.2
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.8e-62 243.4 207 67.6
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.8e-62 243.4 213 61.5
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.0e-62 242.7 209 58.4
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 3.9e-62 242.3 207 59.4
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 3.9e-62 242.3 211 68.2
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.7e-62 241.5 210 60.5
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.1e-61 240.7 207 58.9
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 5.7e-61 238.4 206 60.2
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.7e-61 238.4 211 59.7
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 9.7e-61 237.7 219 63.5
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.7e-60 236.9 197 65.5
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.7e-60 236.9 210 59.5
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.2e-60 236.5 212 60.4
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 4.8e-60 235.3 209 56.5
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.1e-59 234.2 206 58.7
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.4e-59 233.8 212 59.9
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.8e-59 233.4 207 65.7
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 2.4e-59 233.0 207 61.8
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 5.3e-59 231.9 198 59.1
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 9.1e-59 231.1 207 62.3
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.2e-58 230.7 204 62.3
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.2e-58 230.7 219 58.4
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.0e-58 229.9 208 62.5
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 2.0e-58 229.9 219 61.6
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 2.6e-58 229.6 216 57.4
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 4.5e-58 228.8 212 59.4
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.7e-58 228.0 214 62.6
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.3e-57 227.3 205 61.5
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.3e-57 227.3 205 61.5
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.3e-57 227.3 201 64.7
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.3e-57 227.3 207 58.5
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 2.9e-57 226.1 212 57.5
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 2.9e-57 226.1 214 62.6
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 6.5e-57 224.9 206 61.7
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 8.5e-57 224.6 214 62.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.1e-56 224.2 213 61.0
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.9e-56 223.4 214 58.9
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.9e-56 223.4 221 62.4
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.5e-56 223.0 204 61.8
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 3.2e-56 222.6 207 59.4
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.2e-56 222.2 211 62.6
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.6e-55 220.3 211 55.5
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.7e-55 219.5 217 60.4
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.4e-54 217.2 222 59.9
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.4e-54 217.2 225 60.0
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 2.3e-54 216.5 211 55.5
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 2.3e-54 216.5 214 59.8
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 5.2e-54 215.3 217 59.9
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 6.7e-54 214.9 208 56.2
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 8.8e-54 214.5 216 53.7
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 9.7e-53 211.1 213 60.1
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 9.7e-53 211.1 220 53.2
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.3e-52 210.7 208 53.8
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.8e-52 208.8 209 56.0
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 6.3e-52 208.4 216 56.5
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.1e-51 207.6 209 61.2
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.8e-51 206.8 218 55.5
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.8e-51 206.8 215 56.3
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 2.4e-51 206.5 216 51.9
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.4e-51 206.5 208 57.7
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 4.1e-51 205.7 223 50.2
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 4.1e-51 205.7 156 67.3
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 4.5e-50 202.2 217 57.6
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 7.7e-50 201.4 216 52.8
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.0e-49 201.1 207 53.1
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 1.3e-49 200.7 219 55.7
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.2e-48 196.1 211 54.0
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.6e-47 193.7 210 51.0
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.6e-47 193.7 152 64.5
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.6e-47 193.7 214 54.7
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.6e-47 193.7 205 58.5
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 4.7e-47 192.2 211 52.1
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 6.1e-47 191.8 210 55.7
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.0e-46 189.1 192 58.9
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.3e-44 184.1 215 48.4
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.2e-44 183.3 167 56.9
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.8e-44 183.0 159 60.4
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 6.3e-44 181.8 207 50.7
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 2.0e-42 176.8 155 61.9
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.3e-41 174.1 208 44.7
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 8.6e-41 171.4 129 68.2
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 9.5e-40 167.9 197 50.3
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.6e-39 166.0 194 47.9
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.6e-37 159.8 182 48.9
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 4.4e-37 159.1 227 48.5
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.4e-35 154.1 209 41.1
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.6e-34 150.6 143 53.1
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 1.0e-33 147.9 206 41.7
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.0e-33 147.9 217 41.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.3e-33 147.5 215 38.1
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.3e-33 147.5 205 40.0
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.3e-33 146.7 112 64.3
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.1e-32 144.4 209 41.6
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 2.5e-32 143.3 164 48.8
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 2.5e-32 143.3 228 42.5
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 4.3e-32 142.5 119 65.5
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 4.3e-32 142.5 201 41.8
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 2.1e-31 140.2 108 55.6
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.0e-29 133.7 143 51.7
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 9.8e-29 131.3 168 44.0
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 9.8e-29 131.3 211 40.3
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.3e-28 131.0 148 49.3
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.1e-27 125.9 124 56.5
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.5e-26 122.9 124 55.6
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 7.8e-26 121.7 106 58.5
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.0e-25 121.3 162 42.0
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.5e-24 117.5 98 50.0
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.5e-24 117.5 215 35.3
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 3.1e-22 109.8 140 38.6
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 5.2e-22 109.0 196 37.2
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.0e-21 107.1 185 36.8
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 5.8e-21 105.5 87 57.5
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 3.7e-20 102.8 115 53.9
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.2e-18 97.8 86 51.2
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 5.1e-17 92.4 111 51.4
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.1e-17 92.4 146 37.7
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.1e-16 91.3 165 32.7
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 3.3e-16 89.7 199 35.2
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 3.6e-15 86.3 114 41.2
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.1e-14 84.7 101 42.6
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 7.1e-11 72.0 78 47.4
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 1.2e-10 71.2 175 33.1
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 3.5e-10 69.7 76 47.4
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.3e-09 67.8 90 46.7


User provided reference genes

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