Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G034670 Cucumis sativus L. HOM05D000021 ORTHO05D000010 3.7e-31 139.0 72 100.0
ClCG10G021380 Citrullus lanatus HOM05D000021 ORTHO05D149540 6.2e-10 68.6 68 63.2
vmacro02990 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 3.1e-09 66.2 66 48.5
Ca_25061_v3 Cicer arietinum L. HOM05D000021 ORTHO05D000010 1.2e-08 64.3 66 48.5
MBI14_g09005_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 1.2e-08 64.3 64 54.7
MBI16_g28612_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 1.5e-08 63.9 67 50.7
Sc22g0004300 Simmondsia chinensis HOM05D000021 ORTHO05D000010 1.5e-08 63.9 63 55.6
MBI14_g33798_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 2.0e-08 63.5 67 49.3
Oeu006879.1 Olea europaea HOM05D000021 ORTHO05D000010 2.6e-08 63.2 63 55.6
Aqoxy1G00868 Aquilegia oxysepala HOM05D000021 ORTHO05D000010 3.4e-08 62.8 67 52.2
Gorai.012G106100 Gossypium raimondii HOM05D000021 ORTHO05D000010 3.4e-08 62.8 63 54.0
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 3.4e-08 62.8 65 50.8
Gohir.A04G084400 Gossypium hirsutum HOM05D000021 ORTHO05D000010 4.5e-08 62.4 63 54.0
Gohir.D04G123200 Gossypium hirsutum HOM05D000021 ORTHO05D000010 4.5e-08 62.4 63 54.0
vmacro02972 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 4.5e-08 62.4 65 49.2
Medtr6g036790 Medicago truncatula HOM05D000021 ORTHO05D000010 7.6e-08 61.6 63 52.4
Rhsim13G0070900 Rhododendron simsii HOM05D000021 ORTHO05D000010 7.6e-08 61.6 69 44.9
Thecc.05G034300 Theobroma cacao HOM05D000021 ORTHO05D000010 7.6e-08 61.6 62 53.2
Medtr5g026010 Medicago truncatula HOM05D000021 ORTHO05D000010 9.9e-08 61.2 66 47.0
RcHm_v2.0_Chr6g0248051 Rosa chinensis HOM05D000021 ORTHO05D000010 9.9e-08 61.2 66 50.0
Medtr5g025180 Medicago truncatula HOM05D000021 ORTHO05D000010 1.3e-07 60.8 62 51.6
Psat0s3418g0080 Pisum sativum HOM05D000021 ORTHO05D000010 1.3e-07 60.8 65 47.7
Glyma.08G128800 Glycine max HOM05D000021 ORTHO05D000010 1.7e-07 60.5 65 49.2
Glyma.08G128900 Glycine max HOM05D000021 ORTHO05D000010 1.7e-07 60.5 65 49.2
Peaxi162Scf00540g00520 Petunia axillaris HOM05D000021 ORTHO05D000010 1.7e-07 60.5 64 53.1
Peaxi162Scf00540g00523 Petunia axillaris HOM05D000021 ORTHO05D000010 1.7e-07 60.5 64 53.1
FAN03G1818 Fragaria x ananassa HOM05D000021 ORTHO05D000010 2.2e-07 60.1 64 51.6
FAN03G3403 Fragaria x ananassa HOM05D000021 ORTHO05D000010 2.2e-07 60.1 64 51.6
MBI14_g47212_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 2.2e-07 60.1 64 48.4
MD00G1062800 Malus domestica HOM05D000021 ORTHO05D000010 2.2e-07 60.1 67 47.8
MD07G1219700 Malus domestica HOM05D000021 ORTHO05D000010 2.2e-07 60.1 67 47.8
Phvul.002G251604 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 2.2e-07 60.1 63 52.4
Dinv28630 Davidia involucrata HOM05D000021 ORTHO05D000010 2.9e-07 59.7 65 49.2
MBI16_g37731_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 2.9e-07 59.7 64 48.4
Medtr5g019070 Medicago truncatula HOM05D000021 ORTHO05D000010 2.9e-07 59.7 66 50.0
Medtr5g026150 Medicago truncatula HOM05D000021 ORTHO05D000010 2.9e-07 59.7 63 52.4
Phvul.002G215100 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 2.9e-07 59.7 62 51.6
TWI09G0802 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 2.9e-07 59.7 66 50.0
FAN06G1757 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.8e-07 59.3 63 49.2
FAN10G1308 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.8e-07 59.3 63 49.2
MBI14_g36978_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 3.8e-07 59.3 64 50.0
Nitab4.5_0000010g0270 Nicotiana tabacum HOM05D000021 ORTHO05D000010 3.8e-07 59.3 65 52.3
Phvul.002G251400 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 3.8e-07 59.3 63 50.8
Rhsim13G0070500 Rhododendron simsii HOM05D000021 ORTHO05D000010 3.8e-07 59.3 65 47.7
FAN06G4571 Fragaria x ananassa HOM05D000021 ORTHO05D000010 4.9e-07 58.9 64 51.6
Medtr5g026000 Medicago truncatula HOM05D000021 ORTHO05D000010 4.9e-07 58.9 66 47.0
Medtr8g066700 Medicago truncatula HOM05D000021 ORTHO05D000010 4.9e-07 58.9 66 42.4
PSO832G2248 Papaver somniferum HOM05D000021 ORTHO05D000010 4.9e-07 58.9 65 53.8
Potri.016G114400 Populus trichocarpa HOM05D000021 ORTHO05D000010 4.9e-07 58.9 65 49.2
VMungo0251G0023 Vigna mungo HOM05D000021 ORTHO05D000010 4.9e-07 58.9 65 47.7
Ciclev10000345m.g Citrus clementina HOM05D000021 ORTHO05D000010 6.4e-07 58.5 66 50.0
Gohir.A05G297000 Gossypium hirsutum HOM05D000021 ORTHO05D000010 6.4e-07 58.5 65 50.8
Lj1g0025149 Lotus japonicus HOM05D000021 ORTHO05D000010 6.4e-07 58.5 66 50.0
Prupe.6G248100 Prunus persica HOM05D000021 ORTHO05D000010 6.4e-07 58.5 64 46.9
PGSC0003DMG400030443 Solanum tuberosum HOM05D000021 ORTHO05D000010 6.4e-07 58.5 68 51.5
Medtr5g024450 Medicago truncatula HOM05D000021 ORTHO05D000010 8.4e-07 58.2 66 47.0
Psat6g028120 Pisum sativum HOM05D000021 ORTHO05D000010 8.4e-07 58.2 66 47.0
Solyc06g076910.3 Solanum lycopersicum HOM05D000021 ORTHO05D000010 8.4e-07 58.2 64 53.1
Sopen02g021440 Solanum pennellii HOM05D000021 ORTHO05D000010 8.4e-07 58.2 63 50.8
Sopen06g033300 Solanum pennellii HOM05D000021 ORTHO05D000010 8.4e-07 58.2 64 53.1
Migut.I00717 Erythranthe guttata HOM05D000021 ORTHO05D000010 1.1e-06 57.8 64 50.0
Eucgr.D00237 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.1e-06 57.8 68 45.6
FAN10G2336 Fragaria x ananassa HOM05D007885 ORTHO05D000010 1.1e-06 57.8 67 44.8
Lj4g0028000 Lotus japonicus HOM05D000021 ORTHO05D000010 1.1e-06 57.8 64 51.6
Medtr8g089200 Medicago truncatula HOM05D000021 ORTHO05D000010 1.1e-06 57.8 65 47.7
Oeu043938.1 Olea europaea HOM05D000021 ORTHO05D000010 1.1e-06 57.8 65 46.2
Psat0s2617g0200 Pisum sativum HOM05D000021 ORTHO05D000010 1.1e-06 57.8 65 46.2
RhsimUnG0036700 Rhododendron simsii HOM05D000021 ORTHO05D000010 1.1e-06 57.8 64 48.4
Solyc02g072470.4 Solanum lycopersicum HOM05D000021 ORTHO05D000010 1.1e-06 57.8 63 50.8
TPR.G29819 Trifolium pratense HOM05D000021 ORTHO05D000010 1.1e-06 57.8 65 49.2
AT3G47580 Arabidopsis thaliana HOM05D000021 ORTHO05D000010 1.4e-06 57.4 62 51.6
CSS0048607 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.4e-06 57.4 66 48.5
FvH4_7g24243 Fragaria vesca HOM05D000021 ORTHO05D000010 1.4e-06 57.4 63 47.6
FAN01G1213 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.4e-06 57.4 63 47.6
Lj5P347T18 Lonicera japonica HOM05D000021 ORTHO05D000010 1.4e-06 57.4 69 44.9
Medtr5g025860 Medicago truncatula HOM05D000021 ORTHO05D000010 1.4e-06 57.4 63 50.8
Medtr8g068540 Medicago truncatula HOM05D000021 ORTHO05D000010 1.4e-06 57.4 63 49.2
Os01g0153000 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 1.4e-06 57.4 65 49.2
RcHm_v2.0_Chr1g0369841 Rosa chinensis HOM05D000021 ORTHO05D000010 1.4e-06 57.4 63 46.0
TAR636G2483 Trochodendron aralioides HOM05D000021 ORTHO05D000010 1.4e-06 57.4 64 48.4
AT5G20480 Arabidopsis thaliana HOM05D000021 ORTHO05D000010 1.9e-06 57.0 67 47.8
CAN.G394.122 Capsicum annuum HOM05D000021 ORTHO05D000010 1.9e-06 57.0 68 47.1
CDE04G3280 Ceratophyllum demersum HOM05D000021 ORTHO05D000010 1.9e-06 57.0 64 43.8
CsaV3_3G033910 Cucumis sativus L. HOM05D000021 ORTHO05D000010 1.9e-06 57.0 62 51.6
Duzib068G0974 Durio zibethinus HOM05D000021 ORTHO05D000010 1.9e-06 57.0 68 45.6
Migut.M01019 Erythranthe guttata HOM05D000021 ORTHO05D000010 1.9e-06 57.0 67 49.3
Eucgr.I00485 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.9e-06 57.0 64 50.0
Glyma.09G217200 Glycine max HOM05D000021 ORTHO05D000010 1.9e-06 57.0 62 48.4
Nn2g15119 Nelumbo nucifera HOM05D000021 ORTHO05D000010 1.9e-06 57.0 62 50.0
Nitab4.5_0005171g0080 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.9e-06 57.0 63 50.8
Psat7g061000 Pisum sativum HOM05D000021 ORTHO05D000010 1.9e-06 57.0 63 50.8
QL04p089659 Quercus lobata HOM05D000021 ORTHO05D000010 1.9e-06 57.0 63 50.8
Sed0017576 Sechium edule HOM05D000021 ORTHO05D000010 1.9e-06 57.0 63 52.4
SEGI_01431 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.9e-06 57.0 70 45.7
C03p13730 Brassica napus HOM05D000021 ORTHO05D000010 2.4e-06 56.6 62 50.0
CSS0011694 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 2.4e-06 56.6 65 49.2
CSS0045510 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 2.4e-06 56.6 65 49.2
COL.COLO4_08323 Corchorus olitorius HOM05D000021 ORTHO05D000010 2.4e-06 56.6 65 49.2
ECA232G0471 Erigeron canadensis HOM05D000021 ORTHO05D000010 2.4e-06 56.6 71 43.7
Migut.H01425 Erythranthe guttata HOM05D000021 ORTHO05D000010 2.4e-06 56.6 66 48.5
Medtr1g088930 Medicago truncatula HOM05D000021 ORTHO05D000010 2.4e-06 56.6 64 50.0
Nn8g39587 Nelumbo nucifera HOM05D000021 ORTHO05D000010 2.4e-06 56.6 65 47.7
TPR.G8106 Trifolium pratense HOM05D000021 ORTHO05D000010 2.4e-06 56.6 63 49.2
CSS0009110 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.2e-06 56.2 65 47.7
Lj1g0008541 Lotus japonicus HOM05D000021 ORTHO05D000010 3.2e-06 56.2 66 48.5
Medtr5g026200 Medicago truncatula HOM05D000021 ORTHO05D000010 3.2e-06 56.2 66 47.0
Prupe.6G275100 Prunus persica HOM05D000021 ORTHO05D000010 3.2e-06 56.2 63 47.6
ATR0618G261 Amborella trichopoda HOM05D000021 ORTHO05D000010 4.2e-06 55.8 67 43.3
A01p36360 Brassica napus HOM05D000021 ORTHO05D000010 4.2e-06 55.8 62 46.8
BolC3t13759H Brassica oleracea HOM05D000021 ORTHO05D000010 4.2e-06 55.8 64 51.6
CSS0047177 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 4.2e-06 55.8 67 47.8
Ciclev10018832m.g Citrus clementina HOM05D000021 ORTHO05D000010 4.2e-06 55.8 67 46.3
ECA238G2760 Erigeron canadensis HOM05D000021 ORTHO05D000010 4.2e-06 55.8 62 51.6
Eucgr.I00547 Eucalyptus grandis HOM05D000021 ORTHO05D000010 4.2e-06 55.8 65 44.6
Eucgr.L01243 Eucalyptus grandis HOM05D000021 ORTHO05D000010 4.2e-06 55.8 65 44.6
Lalb_Chr20g0108691 Lupinus albus HOM05D000021 ORTHO05D000010 4.2e-06 55.8 63 47.6
MBI14_g27217_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 4.2e-06 55.8 62 51.6
Manes.08G090300 Manihot esculenta HOM05D000021 ORTHO05D000010 4.2e-06 55.8 68 47.1
Manes.08G090800 Manihot esculenta HOM05D000021 ORTHO05D000010 4.2e-06 55.8 68 47.1
Medtr1g088940 Medicago truncatula HOM05D000021 ORTHO05D000010 4.2e-06 55.8 64 48.4
Medtr6g036890 Medicago truncatula HOM05D000021 ORTHO05D000010 4.2e-06 55.8 63 47.6
Psat6g004560 Pisum sativum HOM05D000021 ORTHO05D000010 4.2e-06 55.8 63 47.6
PGR042G3365 Punica granatum HOM05D000021 ORTHO05D000010 4.2e-06 55.8 66 40.9
vmacro20126 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 4.2e-06 55.8 69 42.0
Aqoxy3G01170 Aquilegia oxysepala HOM05D000021 ORTHO05D000010 5.4e-06 55.5 59 50.8
arahy.Tifrunner.gnm1.ann1.2RH3M5 Arachis hypogaea HOM05D000021 ORTHO05D000010 5.4e-06 55.5 65 50.8
Ciclev10003965m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.4e-06 55.5 66 47.0
Ciclev10004039m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.4e-06 55.5 66 47.0
Ciclev10007091m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.4e-06 55.5 63 49.2
Ciclev10013652m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.4e-06 55.5 66 45.5
FAN01G1891 Fragaria x ananassa HOM05D000021 ORTHO05D000010 5.4e-06 55.5 68 48.5
Lj4g0011925 Lotus japonicus HOM05D000021 ORTHO05D000010 5.4e-06 55.5 65 46.2
Manes.14G150300 Manihot esculenta HOM05D000021 ORTHO05D000010 5.4e-06 55.5 64 48.4
Nn5g27951 Nelumbo nucifera HOM05D000021 ORTHO05D000010 5.4e-06 55.5 66 40.9
TAR369G0661 Trochodendron aralioides HOM05D000021 ORTHO05D000010 5.4e-06 55.5 62 51.6
CAN.G1909.13 Capsicum annuum HOM05D000021 ORTHO05D000010 7.1e-06 55.1 64 46.9
CARHR192330 Cardamine hirsuta HOM05D000021 ORTHO05D000010 7.1e-06 55.1 65 46.2
CiPaw.16G044500 Carya illinoinensis HOM05D000021 ORTHO05D000010 7.1e-06 55.1 62 46.8
Ciclev10000036m.g Citrus clementina HOM05D000021 ORTHO05D000010 7.1e-06 55.1 63 50.8
Cc00_g10290 Coffea canephora HOM05D000021 ORTHO05D000010 7.1e-06 55.1 65 44.6
Haze_23909 Corylus avellana HOM05D000021 ORTHO05D000010 7.1e-06 55.1 62 46.8
Eucgr.G03052 Eucalyptus grandis HOM05D000021 ORTHO05D000010 7.1e-06 55.1 62 51.6
Lj2g0005150 Lotus japonicus HOM05D000021 ORTHO05D000010 7.1e-06 55.1 63 47.6
MD11G1101400 Malus domestica HOM05D000021 ORTHO05D000010 7.1e-06 55.1 65 44.6
Manes.08G087600 Manihot esculenta HOM05D000021 ORTHO05D000010 7.1e-06 55.1 68 45.6
Medtr5g025840 Medicago truncatula HOM05D000021 ORTHO05D000010 7.1e-06 55.1 63 49.2
Nitab4.5_0011052g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 7.1e-06 55.1 64 50.0
Prupe.6G248500 Prunus persica HOM05D000021 ORTHO05D000010 7.1e-06 55.1 62 50.0
PGR004G1441 Punica granatum HOM05D000021 ORTHO05D000010 7.1e-06 55.1 70 44.3
Sc14g0005360 Simmondsia chinensis HOM05D000021 ORTHO05D000010 7.1e-06 55.1 66 48.5
TAR624G0758 Trochodendron aralioides HOM05D000021 ORTHO05D000042 7.1e-06 55.1 62 48.4
Aqoxy1G00865 Aquilegia oxysepala HOM05D000021 ORTHO05D000010 9.3e-06 54.7 67 46.3
BcaB01g04575 Brassica carinata HOM05D000021 ORTHO05D000010 9.3e-06 54.7 62 48.4
BolC3t13820H Brassica oleracea HOM05D000021 ORTHO05D000010 9.3e-06 54.7 62 48.4
CAN.G1297.8 Capsicum annuum HOM05D000021 ORTHO05D000010 9.3e-06 54.7 64 46.9
CAN.G1909.7 Capsicum annuum HOM05D000021 ORTHO05D000010 9.3e-06 54.7 64 45.3
Cpa.g.sc19.169 Carica papaya HOM05D000021 ORTHO05D000010 9.3e-06 54.7 68 44.1
Dinv39254 Davidia involucrata HOM05D000021 ORTHO05D000010 9.3e-06 54.7 64 46.9
Migut.I00376 Erythranthe guttata HOM05D000021 ORTHO05D000010 9.3e-06 54.7 68 48.5
Thhalv10000757m.g Eutrema salsugineum HOM05D000021 ORTHO05D000010 9.3e-06 54.7 66 47.0
FAN03G0423 Fragaria x ananassa HOM05D000021 ORTHO05D000010 9.3e-06 54.7 63 47.6
FAN10G3400 Fragaria x ananassa HOM05D000021 ORTHO05D000010 9.3e-06 54.7 63 50.8
Gohir.D12G269950 Gossypium hirsutum HOM05D000021 ORTHO05D000010 9.3e-06 54.7 62 53.2
Lj4g0015959 Lotus japonicus HOM05D000021 ORTHO05D000010 9.3e-06 54.7 63 47.6
MBI07_g11741_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 9.3e-06 54.7 62 50.0
MBI14_g06609_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 9.3e-06 54.7 67 43.3
Manes.08G090000 Manihot esculenta HOM05D000021 ORTHO05D000010 9.3e-06 54.7 68 45.6
Medtr5g044680 Medicago truncatula HOM05D000021 ORTHO05D000010 9.3e-06 54.7 62 51.6
Medtr6g036840 Medicago truncatula HOM05D000021 ORTHO05D000010 9.3e-06 54.7 63 49.2
Medtr8g089210 Medicago truncatula HOM05D000021 ORTHO05D000010 9.3e-06 54.7 65 46.2
Nn2g15116 Nelumbo nucifera HOM05D000021 ORTHO05D000010 9.3e-06 54.7 63 44.4
Os02g0216000 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 9.3e-06 54.7 64 43.8
Phvul.008G225000 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 9.3e-06 54.7 62 50.0
PGR042G2529 Punica granatum HOM05D000021 ORTHO05D000010 9.3e-06 54.7 69 43.5
RcHm_v2.0_Chr1g0339821 Rosa chinensis HOM05D000021 ORTHO05D000010 9.3e-06 54.7 66 43.9
Sopen10g034590 Solanum pennellii HOM05D000021 ORTHO05D000010 9.3e-06 54.7 64 48.4
TWI56G1145 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 9.3e-06 54.7 66 43.9
vmacro20249 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 9.3e-06 54.7 65 49.2


User provided reference genes

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