Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.4e-271 939.1 499 100.0
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.3e-253 879.4 499 94.2
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 1.5e-238 829.3 510 88.4
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 2.4e-170 602.8 438 76.5
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 3.1e-170 602.4 429 76.7
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.0e-125 454.5 504 55.8
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 9.1e-122 441.4 500 52.2
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.0e-120 438.0 501 55.1
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.4e-119 434.1 505 51.9
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 4.7e-118 429.1 482 55.2
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 7.9e-118 428.3 505 53.7
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 1.3e-115 421.0 501 54.5
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.8e-115 419.9 510 50.6
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.7e-115 419.5 510 50.4
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.1e-114 417.9 503 50.7
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.1e-114 417.9 503 50.7
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.5e-113 414.1 503 51.3
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 2.6e-113 413.3 503 50.3
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 6.5e-112 408.7 513 51.5
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.5e-111 407.5 507 52.3
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.5e-111 406.8 506 50.2
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 5.5e-111 405.6 506 52.2
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 3.6e-110 402.9 510 48.8
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 5.2e-109 399.1 505 48.9
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 5.2e-109 399.1 498 51.4
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 2.2e-107 393.7 507 50.7
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 1.6e-105 387.5 501 50.3
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.5e-105 386.0 508 48.0
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.7e-104 384.0 501 48.9
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.2e-103 379.8 505 46.5
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 9.4e-103 378.3 505 46.3
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.4e-101 374.4 497 47.5
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 4.0e-101 372.9 505 49.1
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 6.8e-101 372.1 517 45.6
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.2e-100 371.3 502 48.4
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 3.7e-99 366.3 518 45.8
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.8e-99 365.9 526 45.1
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 3.1e-98 363.2 501 49.5
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 5.4e-98 362.5 501 48.9
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 2.7e-97 360.1 499 47.9
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.3e-96 357.8 506 46.6
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 3.2e-95 353.2 504 46.0
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 4.7e-94 349.4 498 46.8
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 8.0e-94 348.6 506 44.3
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.0e-93 346.7 501 46.3
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 8.8e-93 345.1 503 46.3
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 1.1e-90 338.2 515 45.4
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.4e-90 337.0 503 45.5
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 3.1e-90 336.7 459 50.8
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.5e-89 333.2 508 43.9
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 7.7e-89 332.0 505 45.0
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.7e-88 330.9 519 42.6
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.9e-88 330.1 500 44.4
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.8e-88 329.7 434 48.4
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.8e-88 329.7 497 44.1
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 1.9e-87 327.4 514 46.7
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 4.3e-87 326.2 512 44.7
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 2.8e-86 323.6 512 43.9
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 6.1e-86 322.4 506 46.0
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 5.2e-85 319.3 509 44.4
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 2.0e-84 317.4 514 43.2
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.2e-83 313.9 505 43.0
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 3.7e-83 313.2 388 48.2
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 1.1e-82 311.6 514 42.6
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.4e-82 311.2 496 43.3
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 3.2e-82 310.1 497 43.9
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 7.0e-82 308.9 512 43.6
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.7e-81 307.0 513 43.1
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 4.6e-81 306.2 511 43.6
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.9e-81 305.8 511 43.6
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 1.7e-80 304.3 510 45.1
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 3.9e-80 303.1 483 44.5
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.9e-79 300.8 509 43.2
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.4e-77 294.7 508 41.5
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 3.1e-77 293.5 509 42.2
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 8.9e-77 292.0 499 41.7
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 3.4e-76 290.0 508 40.6
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 9.8e-76 288.5 513 41.1
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 2.9e-75 287.0 447 45.6
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 4.9e-75 286.2 513 40.9
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 6.4e-75 285.8 470 44.7
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.1e-74 285.0 509 40.7
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.9e-74 284.3 514 39.1
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 1.9e-74 284.3 509 40.9
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.3e-72 277.3 506 39.1
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.1e-71 275.0 510 38.6
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.5e-71 274.6 514 38.5
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.5e-71 273.9 544 40.1
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 4.7e-70 269.6 505 38.4
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 4.7e-70 269.6 484 44.0
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 8.1e-70 268.9 505 40.0
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 8.9e-69 265.4 400 42.2
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.3e-67 261.5 487 40.0
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 4.1e-66 256.5 432 41.2
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 5.4e-66 256.1 530 37.5
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.2e-65 255.0 510 40.6
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.7e-64 251.1 450 40.9
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 3.3e-63 246.9 520 38.8
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 4.7e-62 243.0 499 36.3
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 8.1e-62 242.3 442 41.2
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.1e-61 241.9 517 37.7
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.4e-61 241.5 449 39.4
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.5e-60 238.0 517 37.1
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.5e-60 238.0 418 41.4
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.4e-60 236.9 496 39.7
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.2e-59 234.2 414 41.3
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 6.4e-59 232.6 521 36.7
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.5e-57 226.9 479 37.0
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 3.0e-56 223.8 464 37.9
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 4.3e-55 219.9 507 38.7
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.6e-55 219.5 502 38.2
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 8.1e-54 215.7 428 37.1
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.1e-53 215.3 428 37.4
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 1.8e-53 214.5 428 36.9
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 2.4e-53 214.2 430 39.1
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 4.4e-52 209.9 507 35.7
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.3e-51 208.4 424 38.4
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 6.4e-51 206.1 424 38.2
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.4e-50 204.1 500 36.0
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 7.1e-50 202.6 417 37.4
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.2e-49 201.8 270 46.3
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 2.7e-49 200.7 421 36.8
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 1.0e-48 198.7 416 37.3
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 1.3e-48 198.4 432 38.7
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.3e-47 193.4 507 34.5
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.6e-47 193.0 498 34.7
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 2.1e-46 191.0 432 35.9
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 6.2e-46 189.5 435 35.9
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.1e-45 188.7 434 36.2
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 1.3e-43 181.8 437 35.2
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 2.9e-43 180.6 347 39.8
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 3.8e-43 180.3 449 33.2
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.6e-41 173.3 328 37.5
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 6.0e-41 172.9 343 37.9
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 7.9e-41 172.6 400 35.5
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 3.9e-40 170.2 428 35.3
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.6e-38 164.9 296 40.2
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 3.6e-38 163.7 368 35.9
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 6.2e-38 162.9 476 30.9
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 8.1e-38 162.5 476 30.7
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.5e-36 158.3 403 33.3
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 6.4e-35 152.9 213 44.1
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 1.2e-33 148.7 144 55.6
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 7.9e-33 146.0 139 53.2
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.9e-31 141.4 435 31.3
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 2.5e-31 141.0 145 58.6
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.5e-31 141.0 165 46.1
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 4.8e-30 136.7 460 30.9
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 1.4e-29 135.2 224 42.9
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 6.5e-27 126.3 514 30.2
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 7.1e-26 122.9 140 55.0
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 4.8e-22 110.2 522 30.1
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 1.1e-21 109.0 292 34.2
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 1.8e-21 108.2 112 53.6
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 5.9e-20 103.2 116 50.0
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 1.4e-18 98.6 515 25.2
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.6e-17 94.0 100 49.0
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.3e-16 91.3 226 33.2
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.9e-16 90.5 299 30.1
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 7.4e-15 86.3 195 36.4
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.7e-14 84.0 406 27.6
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 2.4e-13 81.3 202 34.7
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 2.6e-12 77.8 181 38.1
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.1e-10 72.4 89 49.4
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.5e-10 71.2 195 30.3
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.2e-10 70.9 386 28.5
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 3.2e-10 70.9 60 55.0
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 9.4e-10 69.3 230 30.0
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 6.1e-09 66.6 290 31.0
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 7.9e-09 66.2 281 31.0
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 1.4e-08 65.5 103 39.8
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 2.0e-07 61.6 74 40.5
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 7.4e-07 59.7 300 27.3
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 2.8e-06 57.8 68 44.1


User provided reference genes

Program Settings