Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G034300 Cucumis sativus L. HOM05D003293 ORTHO05D022137 3.2e-75 285.0 147 100.0
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 4.7e-18 95.1 61 77.0
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 6.1e-18 94.7 61 75.4
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 1.0e-17 94.0 61 75.4
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 1.4e-17 93.6 59 78.0
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.4e-17 93.6 61 73.8
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 1.4e-17 93.6 61 75.4
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 1.4e-17 93.6 61 75.4
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 1.4e-17 93.6 61 75.4
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 1.4e-17 93.6 61 75.4
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 1.8e-17 93.2 61 73.8
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 1.8e-17 93.2 61 73.8
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.8e-17 93.2 61 73.8
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.8e-17 93.2 61 73.8
RcHm_v2.0_Chr5g0023561 Rosa chinensis HOM05D003293 ORTHO05D005060 1.8e-17 93.2 61 73.8
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 2.3e-17 92.8 61 75.4
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 2.3e-17 92.8 61 75.4
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 2.3e-17 92.8 61 75.4
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 2.3e-17 92.8 63 71.4
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 2.3e-17 92.8 61 73.8
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 2.3e-17 92.8 61 75.4
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 2.3e-17 92.8 61 75.4
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 2.3e-17 92.8 61 75.4
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 3.0e-17 92.4 61 73.8
Cpa.g.c45345 Carica papaya HOM05D003293 ORTHO05D005060 3.0e-17 92.4 61 73.8
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 3.0e-17 92.4 61 73.8
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 3.0e-17 92.4 58 77.6
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 3.0e-17 92.4 61 72.1
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 3.0e-17 92.4 61 75.4
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 3.0e-17 92.4 61 73.8
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 3.0e-17 92.4 77 63.6
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 4.0e-17 92.0 61 73.8
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 4.0e-17 92.0 61 73.8
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 4.0e-17 92.0 61 73.8
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 4.0e-17 92.0 61 73.8
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 4.0e-17 92.0 61 73.8
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 4.0e-17 92.0 61 73.8
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 4.0e-17 92.0 61 73.8
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 5.2e-17 91.7 61 73.8
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 5.2e-17 91.7 61 73.8
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 5.2e-17 91.7 61 73.8
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 5.2e-17 91.7 61 73.8
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 5.2e-17 91.7 61 73.8
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 5.2e-17 91.7 61 73.8
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 5.2e-17 91.7 61 73.8
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 5.2e-17 91.7 61 73.8
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 5.2e-17 91.7 61 73.8
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 5.2e-17 91.7 63 71.4
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 5.2e-17 91.7 61 72.1
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 5.2e-17 91.7 61 73.8
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 6.8e-17 91.3 61 75.4
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 6.8e-17 91.3 61 73.8
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 6.8e-17 91.3 61 72.1
Nitab4.5_0003468g0030 Nicotiana tabacum HOM05D003293 ORTHO05D005060 6.8e-17 91.3 61 72.1
Nitab4.5_0005442g0040 Nicotiana tabacum HOM05D003293 ORTHO05D005060 6.8e-17 91.3 61 72.1
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 6.8e-17 91.3 61 72.1
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 6.8e-17 91.3 61 72.1
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 6.8e-17 91.3 61 72.1
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 8.9e-17 90.9 75 64.0
Hma1.2p1_0142F.1_g064350 Hydrangea macrophylla HOM05D003293 ORTHO05D022137 8.9e-17 90.9 59 76.3
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 8.9e-17 90.9 61 72.1
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 8.9e-17 90.9 61 72.1
Actinidia26213 Actinidia chinensis HOM05D003293 ORTHO05D005060 1.2e-16 90.5 61 72.1
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 1.2e-16 90.5 61 72.1
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 1.2e-16 90.5 61 72.1
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 1.2e-16 90.5 61 72.1
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 1.2e-16 90.5 61 72.1
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 1.2e-16 90.5 61 70.5
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.2e-16 90.5 61 70.5
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 1.2e-16 90.5 61 70.5
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 1.2e-16 90.5 61 72.1
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 1.2e-16 90.5 59 74.6
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.2e-16 90.5 61 72.1
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.5e-16 90.1 61 72.1
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 1.5e-16 90.1 61 72.1
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 1.5e-16 90.1 61 72.1
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 1.5e-16 90.1 61 72.1
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 1.5e-16 90.1 61 70.5
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 1.5e-16 90.1 61 70.5
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 2.0e-16 89.7 59 72.9
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 2.0e-16 89.7 61 72.1
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 2.0e-16 89.7 61 70.5
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 2.0e-16 89.7 61 70.5
Eucgr.L02511 Eucalyptus grandis HOM05D003293 ORTHO05D005060 2.0e-16 89.7 61 70.5
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 2.0e-16 89.7 61 72.1
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 2.0e-16 89.7 61 72.1
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 2.0e-16 89.7 61 72.1
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 2.0e-16 89.7 61 72.1
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 2.0e-16 89.7 61 72.1
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 2.6e-16 89.4 75 62.7
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 2.6e-16 89.4 61 70.5
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 2.6e-16 89.4 61 70.5
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 2.6e-16 89.4 61 70.5
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 2.6e-16 89.4 61 72.1
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 2.6e-16 89.4 61 72.1
Gohir.D13G220550 Gossypium hirsutum HOM05D003293 ORTHO05D022137 3.4e-16 89.0 59 72.9
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 3.4e-16 89.0 61 72.1
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 3.4e-16 89.0 61 72.1
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 4.4e-16 88.6 75 62.7
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 4.4e-16 88.6 61 72.1
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 4.4e-16 88.6 61 72.1
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 4.4e-16 88.6 61 72.1
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 4.4e-16 88.6 61 72.1
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 5.7e-16 88.2 59 71.2
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 5.7e-16 88.2 59 71.2
Rhsim01G0231900 Rhododendron simsii HOM05D003293 ORTHO05D022137 5.7e-16 88.2 59 72.9
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 7.5e-16 87.8 61 70.5
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 7.5e-16 87.8 61 70.5
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 7.5e-16 87.8 61 68.9
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 9.8e-16 87.4 61 70.5
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 9.8e-16 87.4 61 70.5
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 9.8e-16 87.4 61 70.5
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 9.8e-16 87.4 61 70.5
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 9.8e-16 87.4 61 70.5
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 9.8e-16 87.4 61 70.5
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 9.8e-16 87.4 61 68.9
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 9.8e-16 87.4 61 68.9
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 9.8e-16 87.4 61 70.5
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 1.3e-15 87.0 61 70.5
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 1.3e-15 87.0 61 70.5
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 1.3e-15 87.0 61 70.5
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.3e-15 87.0 61 67.2
Rhsim10G0161300 Rhododendron simsii HOM05D003293 ORTHO05D005060 1.3e-15 87.0 61 70.5
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.7e-15 86.7 61 70.5
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 1.7e-15 86.7 75 61.3
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 2.2e-15 86.3 75 61.3
CSS0007137 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D022137 2.2e-15 86.3 61 68.9
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 2.2e-15 86.3 61 65.6
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 2.2e-15 86.3 62 66.1
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 2.8e-15 85.9 61 67.2
HPP92_020646 Vanilla planifolia HOM05D003293 ORTHO05D005060 3.7e-15 85.5 61 67.2
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 4.9e-15 85.1 61 68.9
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 4.9e-15 85.1 61 65.6
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 4.9e-15 85.1 61 65.6
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 6.3e-15 84.7 77 58.4
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 6.3e-15 84.7 61 65.6
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 6.3e-15 84.7 61 65.6
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 8.3e-15 84.3 61 63.9
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 8.3e-15 84.3 58 69.0
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 2.4e-14 82.8 61 63.9
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 4.1e-14 82.0 56 69.6
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 5.4e-14 81.6 59 67.8
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 7.0e-14 81.3 61 62.3
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 1.6e-13 80.1 61 60.7
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 3.5e-13 79.0 63 58.7
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 7.8e-13 77.8 63 60.3
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 1.0e-12 77.4 61 60.7
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 1.3e-12 77.0 63 55.6
Zm00001eb213620 Zea mays HOM05D003293 ORTHO05D005060 1.7e-12 76.6 61 62.3
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 3.8e-12 75.5 77 51.9
Pp3c1_34170 Physcomitrium patens HOM05D003293 ORTHO05D005060 3.8e-12 75.5 77 51.9
arahy.Tifrunner.gnm1.ann1.59CN8W Arachis hypogaea HOM05D003293 ORTHO05D005060 8.6e-12 74.3 61 62.3
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 1.5e-11 73.6 61 55.7
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 3.3e-11 72.4 61 52.5
BcaB02g06616 Brassica carinata HOM05D003293 ORTHO05D005060 1.2e-10 70.5 48 72.9


User provided reference genes

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