Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 2.6e-195 685.3 354 100.0
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 8.6e-175 617.1 358 90.8
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.1e-149 532.7 366 79.0
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 1.4e-97 360.5 375 60.8
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 6.6e-42 175.6 413 35.4
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 1.9e-41 174.1 411 34.8
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.2e-40 171.4 429 33.6
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 1.4e-39 167.9 416 33.2
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 2.3e-39 167.2 409 35.5
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 2.6e-38 163.7 399 34.3
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 5.8e-38 162.5 399 33.8
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 9.8e-38 161.8 428 33.4
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 8.3e-37 158.7 422 31.5
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.4e-36 157.1 355 34.9
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 5.4e-36 156.0 414 32.9
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 2.1e-35 154.1 408 33.3
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 2.7e-35 153.7 399 34.3
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 7.8e-35 152.1 417 32.9
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 1.0e-34 151.8 384 33.6
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.3e-34 151.4 355 34.4
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 2.3e-34 150.6 422 33.2
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 3.0e-34 150.2 380 35.5
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 8.6e-34 148.7 379 35.1
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 8.6e-34 148.7 423 31.4
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.3e-33 146.7 367 35.4
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 5.6e-33 146.0 416 32.9
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 2.1e-32 144.1 408 32.1
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.8e-32 143.7 377 35.0
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 3.6e-32 143.3 282 40.4
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 4.7e-32 142.9 375 34.1
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 6.2e-32 142.5 409 33.5
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 8.1e-32 142.1 422 33.9
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.2e-30 138.3 416 33.4
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.5e-30 137.9 419 33.4
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.8e-30 136.0 414 33.3
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 7.5e-30 135.6 416 33.7
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.3e-29 134.8 411 31.6
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 3.7e-29 133.3 437 30.0
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 1.9e-28 131.0 379 34.3
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 7.8e-27 125.6 395 33.2
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 2.3e-26 124.0 397 30.7
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 5.1e-26 122.9 418 30.1
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 5.1e-26 122.9 305 32.8
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.1e-26 122.9 308 38.6
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 5.1e-26 122.9 410 30.0
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 3.3e-25 120.2 289 32.9
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 7.3e-25 119.0 401 31.2
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 1.2e-24 118.2 405 33.3
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.6e-24 117.9 319 34.5
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 2.1e-24 117.5 422 30.8
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 2.1e-24 117.5 413 30.8
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 2.1e-24 117.5 412 29.6
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 2.8e-24 117.1 422 30.8
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 2.8e-24 117.1 432 30.8
Glyma.01G120800 Glycine max HOM05D003726 ORTHO05D003520 4.7e-24 116.3 421 30.9
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 1.1e-23 115.2 379 30.9
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 5.2e-23 112.8 410 30.2
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 6.8e-23 112.5 354 29.7
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 6.8e-23 112.5 354 29.7
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 2.0e-22 110.9 311 31.5
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.6e-22 110.5 401 31.4
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 7.6e-22 109.0 310 31.9
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 9.9e-22 108.6 182 35.7
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 9.9e-22 108.6 373 29.0
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 1.3e-21 108.2 390 29.7
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.7e-21 107.8 377 31.8
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 2.9e-21 107.1 392 27.8
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 3.8e-21 106.7 388 28.9
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 2.4e-20 104.0 287 34.1
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 3.2e-20 103.6 307 31.3
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 5.4e-20 102.8 354 29.7
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 5.4e-20 102.8 394 29.9
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 9.2e-20 102.1 396 29.3
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 1.2e-19 101.7 353 31.2
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.6e-19 101.3 367 29.2
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 1.6e-19 101.3 394 29.2
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.6e-19 101.3 293 31.7
Psat7g245680 Pisum sativum HOM05D003726 ORTHO05D003520 1.6e-19 101.3 398 30.4
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 2.1e-19 100.9 390 29.5
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 3.5e-19 100.1 380 28.2
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 7.8e-19 99.0 404 28.0
THA.LOC104816197 Tarenaya hassleriana HOM05D013727 ORTHO05D003520 1.7e-18 97.8 414 25.6
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.3e-18 97.4 302 33.8
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.5e-17 94.0 270 33.0
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 2.5e-17 94.0 384 28.1
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 7.3e-17 92.4 393 26.7
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 9.6e-17 92.0 123 47.2
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 9.6e-17 92.0 336 29.5
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.2e-16 91.7 368 25.5
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 2.1e-16 90.9 418 26.3
arahy.Tifrunner.gnm1.ann1.W084UE Arachis hypogaea HOM05D003726 ORTHO05D003520 2.8e-16 90.5 368 29.1
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.6e-16 90.1 270 32.2
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 3.6e-16 90.1 194 35.1
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 3.6e-16 90.1 309 27.2
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 6.2e-16 89.4 394 28.2
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 6.2e-16 89.4 416 25.0
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 2.4e-15 87.4 355 28.5
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 3.1e-15 87.0 279 31.9
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 4.0e-15 86.7 335 28.1
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 4.0e-15 86.7 287 31.7
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 6.9e-15 85.9 378 28.3
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 6.9e-15 85.9 358 27.9
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 9.0e-15 85.5 393 25.7
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.2e-14 85.1 340 30.0
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 1.5e-14 84.7 290 28.3
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 1.5e-14 84.7 431 23.9
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 1.5e-14 84.7 373 27.9
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 2.0e-14 84.3 299 29.4
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 2.6e-14 84.0 365 28.2
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 2.6e-14 84.0 408 25.7
arahy.Tifrunner.gnm1.ann1.71KX3G Arachis hypogaea HOM05D003726 ORTHO05D003520 3.4e-14 83.6 344 28.8
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.4e-14 83.6 397 25.2
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 4.4e-14 83.2 356 26.4
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 5.8e-14 82.8 353 25.8
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 5.8e-14 82.8 296 29.1
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 7.6e-14 82.4 349 26.6
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 7.6e-14 82.4 145 35.9
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 7.6e-14 82.4 280 30.7
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 1.3e-13 81.6 251 29.5
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.7e-13 81.3 397 24.9
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 2.2e-13 80.9 374 26.5
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.9e-13 80.5 357 28.0
arahy.Tifrunner.gnm1.ann1.142K7L Arachis hypogaea HOM05D003726 ORTHO05D003520 3.8e-13 80.1 275 30.9
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 3.8e-13 80.1 431 26.7
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 8.4e-13 79.0 359 25.1
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 8.4e-13 79.0 397 25.7
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 1.1e-12 78.6 367 26.4
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.4e-12 78.2 282 28.7
BolC2t06018H Brassica oleracea HOM05D013727 ORTHO05D003520 1.9e-12 77.8 144 36.1
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 1.9e-12 77.8 348 27.3
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 1.6e-11 74.7 383 25.8
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.1e-11 74.3 424 26.7
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 3.5e-11 73.6 359 27.0
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 4.6e-11 73.2 272 28.7
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 1.0e-10 72.0 383 25.8
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 1.3e-10 71.6 389 23.9
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 1.3e-10 71.6 299 28.1
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.7e-10 71.2 371 27.5
AUR62030799 Chenopodium quinoa HOM05D029928 ORTHO05D003520 2.3e-10 70.9 288 32.3
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 2.3e-10 70.9 280 27.5
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 2.3e-10 70.9 146 34.9
AL6G10750 Arabidopsis lyrata HOM05D013727 ORTHO05D003520 3.0e-10 70.5 328 25.9
Sp6g40680 Schrenkiella parvula HOM05D013727 ORTHO05D003520 3.0e-10 70.5 151 33.1
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 3.9e-10 70.1 134 32.8
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 3.9e-10 70.1 303 28.4
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 5.1e-10 69.7 218 29.4
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 8.7e-10 68.9 314 25.8
BraA02t04692Z Brassica rapa HOM05D013727 ORTHO05D003520 1.1e-09 68.6 145 33.8
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 1.1e-09 68.6 290 27.9
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 1.1e-09 68.6 270 31.1
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 1.9e-09 67.8 395 24.8
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 1.9e-09 67.8 387 25.6
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 1.9e-09 67.8 277 27.1
Carub.0006s0045 Capsella rubella HOM05D013727 ORTHO05D003520 2.5e-09 67.4 321 27.7
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 3.3e-09 67.0 397 23.7
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 4.3e-09 66.6 393 24.2
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 4.3e-09 66.6 281 31.0
Aa31LG1G23030 Aethionema arabicum HOM05D013727 ORTHO05D003520 5.6e-09 66.2 208 27.4
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 7.3e-09 65.9 346 27.5
CARHR211750 Cardamine hirsuta HOM05D013727 ORTHO05D003520 9.6e-09 65.5 154 32.5
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 9.6e-09 65.5 123 35.0
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.6e-08 64.7 397 23.4
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.6e-08 63.5 346 27.2
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 4.8e-08 63.2 309 26.9
AT5G01370 Arabidopsis thaliana HOM05D013727 ORTHO05D003520 1.4e-07 61.6 328 25.0
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 1.4e-07 61.6 347 25.1
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 1.4e-07 61.6 347 25.1
Hund11000 Selenicereus undatus HOM05D046068 ORTHO05D003520 1.4e-07 61.6 251 29.9
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 1.8e-07 61.2 397 25.4
Thhalv10016075m.g Eutrema salsugineum HOM05D013727 ORTHO05D003520 1.8e-07 61.2 429 22.1
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 4.0e-07 60.1 327 24.2
Gohir.A04G091850 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.2e-06 58.5 220 30.0
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 2.6e-06 57.4 379 24.3
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 2.6e-06 57.4 276 26.8
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 4.5e-06 56.6 269 24.9
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 5.8e-06 56.2 356 25.0


User provided reference genes

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