Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G033590 Cucumis sativus L. HOM05D007530 ORTHO05D009556 4.0e-31 137.5 72 100.0
MELO3C009149.2 Cucumis melo HOM05D007530 ORTHO05D009556 5.8e-30 133.7 72 95.8
Sed0024664 Sechium edule HOM05D007530 ORTHO05D009556 7.9e-27 123.2 72 90.3
ClCG10G022290 Citrullus lanatus HOM05D007530 ORTHO05D009556 1.3e-24 115.9 66 89.4
GSVIVG01011181001 Vitis vinifera HOM05D007530 ORTHO05D009556 2.4e-23 111.7 72 80.6
Potri.016G118800 Populus trichocarpa HOM05D007530 ORTHO05D009556 6.9e-23 110.2 70 78.6
CiPaw.10G157500 Carya illinoinensis HOM05D007530 ORTHO05D009556 2.0e-22 108.6 72 75.0
Potri.006G101901 Populus trichocarpa HOM05D007530 ORTHO05D009556 4.5e-22 107.5 70 77.1
Glyma.16G098900 Glycine max HOM05D007530 ORTHO05D009556 1.3e-21 105.9 73 78.1
TAR623G0260 Trochodendron aralioides HOM05D007530 ORTHO05D009556 1.3e-21 105.9 72 75.0
Glyma.18G203200 Glycine max HOM05D007530 ORTHO05D009556 2.2e-21 105.1 71 77.5
Manes.08G093800 Manihot esculenta HOM05D007530 ORTHO05D009556 2.2e-21 105.1 70 75.7
Ca_07655_v3 Cicer arietinum L. HOM05D007530 ORTHO05D009556 2.9e-21 104.8 72 75.0
CANSAT35G1517 Cannabis sativa HOM05D007530 ORTHO05D009556 6.5e-21 103.6 70 75.7
Manes.09G107300 Manihot esculenta HOM05D007530 ORTHO05D009556 6.5e-21 103.6 70 72.9
arahy.Tifrunner.gnm1.ann1.88RA0A Arachis hypogaea HOM05D007530 ORTHO05D009556 8.4e-21 103.2 73 75.3
Glyma.07G152100 Glycine max HOM05D007530 ORTHO05D009556 8.4e-21 103.2 73 76.7
Prupe.6G279800 Prunus persica HOM05D007530 ORTHO05D009556 1.1e-20 102.8 73 76.7
Phvul.008G096700 Phaseolus vulgaris HOM05D007530 ORTHO05D009556 5.5e-20 100.5 70 75.7
CSS0025168 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 7.1e-20 100.1 66 77.3
Psat3g126880 Pisum sativum HOM05D007530 ORTHO05D009556 7.1e-20 100.1 72 72.2
Sabra06G0078200 Salix brachista HOM05D007530 ORTHO05D009556 9.3e-20 99.8 66 75.8
PGSC0003DMG400011024 Solanum tuberosum HOM05D007530 ORTHO05D009556 1.2e-19 99.4 70 68.6
THA.LOC109117252 Tarenaya hassleriana HOM05D007530 ORTHO05D009556 1.2e-19 99.4 72 69.4
arahy.Tifrunner.gnm1.ann1.ZMF41F Arachis hypogaea HOM05D007530 ORTHO05D009556 1.6e-19 99.0 73 72.6
Nn2g13162 Nelumbo nucifera HOM05D007530 ORTHO05D009556 1.6e-19 99.0 72 70.8
Rhsim05G0217200 Rhododendron simsii HOM05D000043 ORTHO05D005398 1.6e-19 99.0 66 74.2
Hund10987 Selenicereus undatus HOM05D007530 ORTHO05D009556 2.7e-19 98.2 71 70.4
Solyc10g085215.1 Solanum lycopersicum HOM05D007530 ORTHO05D009556 2.7e-19 98.2 70 68.6
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 3.5e-19 97.8 69 71.0
Sopen10g034690 Solanum pennellii HOM05D007530 ORTHO05D009556 3.5e-19 97.8 70 68.6
Thecc.05G013400 Theobroma cacao HOM05D007530 ORTHO05D009556 3.5e-19 97.8 72 70.8
Lalb_Chr01g0023151 Lupinus albus HOM05D007530 ORTHO05D009556 4.6e-19 97.4 67 73.1
HanXRQChr10g0294071 Helianthus annuus HOM05D007530 ORTHO05D009556 6.1e-19 97.1 72 70.8
arahy.Tifrunner.gnm1.ann1.R0LR40 Arachis hypogaea HOM05D007530 ORTHO05D009556 7.9e-19 96.7 66 72.7
Medtr7g068940 Medicago truncatula HOM05D007530 ORTHO05D009556 7.9e-19 96.7 70 70.0
MBI15_g24380_MAGBIO Magnolia biondii HOM05D007530 ORTHO05D009556 1.0e-18 96.3 67 71.6
Migut.L02025 Erythranthe guttata HOM05D007530 ORTHO05D009556 1.3e-18 95.9 70 68.6
Duzib093G1475 Durio zibethinus HOM05D007530 ORTHO05D009556 1.8e-18 95.5 67 70.1
ECA247G1901 Erigeron canadensis HOM05D007530 ORTHO05D009556 3.9e-18 94.4 67 70.1
Duzib106G1059 Durio zibethinus HOM05D007530 ORTHO05D009556 5.1e-18 94.0 67 70.1
MD12G1171600 Malus domestica HOM05D007530 ORTHO05D009556 6.7e-18 93.6 71 73.2
Haze_21023 Corylus avellana HOM05D002620 ORTHO05D006469 8.7e-18 93.2 88 61.4
RcHm_v2.0_Chr3g0462691 Rosa chinensis HOM05D007530 ORTHO05D009556 8.7e-18 93.2 62 74.2
FvH4_6g11210 Fragaria vesca HOM05D007530 ORTHO05D009556 1.1e-17 92.8 63 71.4
FAN02G2108 Fragaria x ananassa HOM05D007530 ORTHO05D009556 1.1e-17 92.8 63 71.4
FAN09G3168 Fragaria x ananassa HOM05D007530 ORTHO05D009556 1.1e-17 92.8 63 71.4
FAN14G2496 Fragaria x ananassa HOM05D007530 ORTHO05D009556 1.1e-17 92.8 63 71.4
FAN14G3881 Fragaria x ananassa HOM05D007530 ORTHO05D009556 1.1e-17 92.8 63 71.4
FAN05G2692 Fragaria x ananassa HOM05D007530 ORTHO05D009556 1.5e-17 92.4 62 72.6
Sc01g0006890 Simmondsia chinensis HOM05D007530 ORTHO05D009556 1.5e-17 92.4 72 63.9
Aa31LG5G18900 Aethionema arabicum HOM05D007530 ORTHO05D009556 2.5e-17 91.7 72 62.5
PGSC0003DMG400019174 Solanum tuberosum HOM05D007530 ORTHO05D009556 2.5e-17 91.7 68 64.7
unitig_37.g12653 Utricularia gibba HOM05D007530 ORTHO05D009556 2.5e-17 91.7 71 63.4
PGR142G0763 Punica granatum HOM05D007530 ORTHO05D009556 3.3e-17 91.3 72 63.9
Nitab4.5_0003514g0010 Nicotiana tabacum HOM05D007530 ORTHO05D009556 4.3e-17 90.9 70 62.9
SalBow4G2966 Salvia bowleyana HOM05D007530 ORTHO05D009556 4.3e-17 90.9 65 69.2
Gohir.A04G092400 Gossypium hirsutum HOM05D007530 ORTHO05D009556 5.7e-17 90.5 65 69.2
Gohir.D04G131700 Gossypium hirsutum HOM05D007530 ORTHO05D009556 5.7e-17 90.5 65 69.2
PSO384G0267 Papaver somniferum HOM05D007530 ORTHO05D009556 5.7e-17 90.5 63 73.0
Nitab4.5_0000444g0050 Nicotiana tabacum HOM05D007530 ORTHO05D009556 7.4e-17 90.1 70 62.9
Hma1.2p1_0362F.1_g136440 Hydrangea macrophylla HOM05D007530 ORTHO05D009556 9.7e-17 89.7 64 68.8
TWI74G1090 Tripterygium wilfordii HOM05D007530 ORTHO05D009556 9.7e-17 89.7 67 64.2
Gorai.012G115500 Gossypium raimondii HOM05D007530 ORTHO05D009556 1.6e-16 89.0 64 68.8
Aa31LG1G23010 Aethionema arabicum HOM05D007530 ORTHO05D009556 2.8e-16 88.2 72 62.5
Lalb_Chr19g0124461 Lupinus albus HOM05D007530 ORTHO05D009556 2.8e-16 88.2 61 72.1
HPP92_021352 Vanilla planifolia HOM05D007530 ORTHO05D009556 2.8e-16 88.2 66 65.2
Nitab4.5_0000770g0040 Nicotiana tabacum HOM05D007530 ORTHO05D009556 8.2e-16 86.7 64 64.1
Carub.0006s0047 Capsella rubella HOM05D007530 ORTHO05D009556 1.1e-15 86.3 70 60.0
CARHR211730 Cardamine hirsuta HOM05D007530 ORTHO05D009556 1.8e-15 85.5 67 61.2
Thhalv10015199m.g Eutrema salsugineum HOM05D007530 ORTHO05D009556 1.8e-15 85.5 70 61.4
Nitab4.5_0004107g0030 Nicotiana tabacum HOM05D007530 ORTHO05D009556 3.1e-15 84.7 64 62.5
Sp6g40660 Schrenkiella parvula HOM05D007530 ORTHO05D009556 4.1e-15 84.3 67 61.2
HPP92_021347 Vanilla planifolia HOM05D007530 ORTHO05D009556 4.1e-15 84.3 66 62.1
AL6G10780 Arabidopsis lyrata HOM05D007530 ORTHO05D009556 1.2e-14 82.8 67 58.2
AT5G01350 Arabidopsis thaliana HOM05D007530 ORTHO05D009556 1.2e-14 82.8 67 58.2
EL10Ac5g12543 Beta vulgaris HOM05D007530 ORTHO05D009556 1.2e-14 82.8 71 56.3
BcaB01g06225 Brassica carinata HOM05D007530 ORTHO05D009556 1.5e-14 82.4 67 58.2
COL.COLO4_14508 Corchorus olitorius HOM05D002620 ORTHO05D006469 1.5e-14 82.4 62 64.5
Mapoly0015s0144 Marchantia polymorpha HOM05D007530 ORTHO05D009556 1.3e-13 79.3 65 58.5
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 2.9e-13 78.2 64 57.8
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 2.9e-13 78.2 68 55.9
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 2.9e-13 78.2 68 55.9
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 2.9e-13 78.2 64 57.8
ATR0681G213 Amborella trichopoda HOM05D007530 ORTHO05D009556 3.8e-13 77.8 70 60.0
Pp3c21_22550 Physcomitrium patens HOM05D007530 ORTHO05D009556 1.9e-12 75.5 63 57.1
Aqoxy2G00850 Aquilegia oxysepala HOM05D007530 ORTHO05D009556 5.5e-12 73.9 72 51.4
TPR.G2527 Trifolium pratense HOM05D007530 ORTHO05D009556 1.2e-11 72.8 68 61.8
Lsat_1_v5_gn_9_35161 Lactuca sativa HOM05D007530 ORTHO05D009556 3.6e-11 71.2 45 75.6
AagrBONN_evm.TU.Sc2ySwM_117.3278 Anthoceros agrestis HOM05D007530 ORTHO05D009556 4.6e-11 70.9 65 55.4
Os04g0508100 Oryza sativa ssp. japonica HOM05D007530 ORTHO05D009556 7.9e-11 70.1 67 52.2
Zm00001eb426270 Zea mays HOM05D007530 ORTHO05D009556 7.9e-11 70.1 69 52.2
vmacro20294 Vaccinium macrocarpon HOM05D007530 ORTHO05D009556 1.8e-10 68.9 47 76.6
Eucgr.G03069 Eucalyptus grandis HOM05D007530 ORTHO05D009556 5.1e-10 67.4 43 69.8
Cc06_g01140 Coffea canephora HOM05D007530 ORTHO05D009556 6.7e-10 67.0 44 70.5
CSS0006801 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 1.1e-09 66.2 45 75.6
CAN.G243.17 Capsicum annuum HOM05D007530 ORTHO05D009556 3.3e-09 64.7 51 66.7
arahy.Tifrunner.gnm1.ann1.K2ZES1 Arachis hypogaea HOM05D008645 ORTHO05D009556 2.8e-08 61.6 46 73.9
Cpa.g.sc11.95 Carica papaya HOM05D007530 ORTHO05D009556 2.8e-08 61.6 42 73.8
Lj1g0004890 Lotus japonicus HOM05D007530 ORTHO05D009556 3.7e-08 61.2 45 73.3
Peaxi162Scf00014g00124 Petunia axillaris HOM05D007530 ORTHO05D009556 1.1e-07 59.7 47 63.8
Sabra16G0114900 Salix brachista HOM05D007530 ORTHO05D000135 1.8e-07 58.9 43 74.4
Oeu033582.2 Olea europaea HOM05D007530 ORTHO05D009556 3.1e-07 58.2 53 64.2


User provided reference genes

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