Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 0.0e+00 1688.3 902 100.0
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 0.0e+00 1652.1 902 98.0
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 0.0e+00 1514.2 904 90.4
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 0.0e+00 1434.9 905 84.9
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1089.3 917 66.8
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 0.0e+00 1089.3 915 66.8
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 6.2e-312 1074.7 914 68.1
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 6.3e-307 1057.4 916 64.6
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 2.9e-304 1048.5 917 65.6
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 5.5e-303 1044.3 914 65.9
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.5e-300 1036.2 915 63.2
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 5.7e-300 1034.2 905 65.2
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 5.7e-300 1034.2 915 62.8
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 6.3e-299 1030.8 913 66.3
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 7.0e-298 1027.3 912 64.1
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 2.7e-297 1025.4 915 64.5
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 1.3e-296 1023.1 914 64.8
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 1.7e-296 1022.7 918 64.4
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 9.4e-295 1016.9 916 64.1
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.3e-293 1012.3 915 63.7
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 9.8e-292 1006.9 918 62.5
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 1.5e-287 993.0 914 62.9
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 1.5e-284 983.0 917 63.0
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 7.5e-284 980.7 918 62.2
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 3.5e-281 971.8 909 63.4
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 7.8e-281 970.7 873 65.6
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 2.5e-279 965.7 870 63.6
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.2e-278 963.4 920 59.7
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 4.7e-278 961.4 920 59.5
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 5.2e-277 958.0 915 61.2
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 1.5e-276 956.4 916 61.0
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 7.5e-276 954.1 926 58.3
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 2.2e-275 952.6 921 59.2
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 1.4e-274 949.9 917 61.1
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 3.2e-274 948.7 901 60.4
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 9.2e-274 947.2 911 61.3
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 7.8e-273 944.1 900 63.3
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 2.3e-272 942.6 907 62.4
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 3.9e-272 941.8 913 61.4
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.9e-272 941.8 917 61.2
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.1e-271 940.3 920 59.8
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 1.9e-271 939.5 913 60.9
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.9e-271 939.5 900 63.2
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 4.3e-271 938.3 923 58.9
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 5.6e-271 937.9 920 59.7
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 3.1e-269 932.2 918 59.5
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 4.0e-269 931.8 900 63.1
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 4.4e-268 928.3 925 59.4
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.3e-267 926.8 925 59.6
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 1.7e-267 926.4 912 61.1
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 6.4e-267 924.5 903 62.0
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 5.4e-266 921.4 925 59.2
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 1.9e-263 912.9 897 60.9
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 2.1e-262 909.4 918 59.6
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 8.1e-262 907.5 912 59.9
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 6.8e-261 904.4 911 58.4
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 3.7e-259 898.7 911 59.7
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 8.4e-259 897.5 912 59.2
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 3.2e-258 895.6 793 65.7
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 4.1e-258 895.2 912 59.3
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 5.4e-258 894.8 806 64.0
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 5.4e-258 894.8 806 64.0
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 5.4e-258 894.8 910 60.0
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.6e-257 893.3 923 58.1
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 4.6e-257 891.7 926 58.7
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 1.0e-256 890.6 926 58.6
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 8.6e-256 887.5 904 59.0
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 6.2e-254 881.3 872 60.0
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 1.4e-253 880.2 817 63.3
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 1.8e-253 879.8 907 56.9
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 2.4e-253 879.4 892 57.5
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 1.4e-250 870.2 911 58.8
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 1.9e-250 869.8 910 58.8
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 3.5e-249 865.5 909 56.2
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 1.3e-248 863.6 874 59.3
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 2.5e-247 859.4 898 56.8
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.6e-246 856.7 919 55.2
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 6.9e-245 851.3 932 55.7
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.5e-241 839.0 914 56.7
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 4.6e-241 838.6 916 57.4
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 1.3e-238 830.5 911 57.2
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 1.4e-237 827.0 872 57.6
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 3.1e-237 825.9 909 55.8
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 5.3e-237 825.1 916 54.4
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 1.9e-234 816.6 914 54.0
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 7.1e-234 814.7 880 58.3
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 5.1e-232 808.5 913 52.2
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 2.5e-231 806.2 919 55.3
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.6e-230 803.5 932 53.9
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 1.3e-222 777.3 918 51.6
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 1.6e-222 776.9 908 52.5
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 1.3e-219 767.3 875 54.6
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 1.4e-218 763.8 919 54.0
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 3.2e-218 762.7 897 53.0
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 9.7e-215 751.1 912 50.7
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.6e-212 743.0 910 51.8
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 4.5e-212 742.3 880 54.2
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.1e-209 733.4 918 52.8
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 8.8e-208 728.0 783 55.6
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 9.7e-207 724.5 923 52.4
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 6.9e-205 718.4 873 52.2
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 2.2e-203 713.4 906 52.0
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 1.6e-201 707.2 896 51.8
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 2.7e-201 706.4 910 51.5
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 1.0e-200 704.5 903 51.7
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 1.1e-199 701.0 905 50.7
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 5.7e-199 698.7 874 51.6
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 1.7e-198 697.2 896 51.5
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 3.7e-198 696.0 860 49.2
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 3.7e-198 696.0 913 49.0
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 1.1e-197 694.5 899 51.6
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.6e-196 690.6 882 52.5
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 2.0e-196 690.3 857 53.2
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 3.6e-193 679.5 849 51.8
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 4.7e-193 679.1 904 49.0
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 2.0e-191 673.7 904 47.9
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 9.7e-191 671.4 887 50.4
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 2.2e-190 670.2 859 51.9
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 3.1e-189 666.4 741 57.1
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 4.1e-189 666.0 862 49.9
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 7.0e-189 665.2 887 51.3
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.9e-186 657.1 857 50.1
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 3.2e-186 656.4 884 50.7
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 6.1e-185 652.1 925 46.7
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.0e-184 651.4 892 47.8
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 4.0e-184 649.4 884 50.9
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 1.5e-183 647.5 883 50.7
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 7.5e-183 645.2 885 50.1
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 3.7e-182 642.9 872 50.6
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 1.4e-181 641.0 871 50.9
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 2.7e-180 636.7 900 48.9
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 1.0e-176 624.8 923 47.6
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 2.3e-176 623.6 895 48.2
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 2.3e-176 623.6 943 47.5
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 4.0e-176 622.9 816 51.0
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 3.4e-175 619.8 769 53.6
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 7.5e-175 618.6 923 47.6
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 1.6e-172 610.9 918 47.9
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 2.3e-171 607.1 498 69.1
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 1.2e-167 594.7 771 50.8
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 7.5e-167 592.0 919 47.7
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 7.5e-167 592.0 924 48.1
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.6e-161 574.3 783 48.7
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 8.3e-158 562.0 922 44.3
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 3.9e-155 553.1 883 45.2
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 8.1e-145 518.8 751 48.3
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 2.3e-139 500.7 895 43.8
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 7.3e-138 495.7 861 43.2
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 1.1e-136 491.9 858 41.4
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 2.6e-135 487.3 897 42.7
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.3e-131 474.9 908 41.0
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 4.6e-124 449.9 831 43.7
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 3.3e-122 443.7 918 41.0
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 2.2e-118 431.0 926 40.6
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 1.9e-117 427.9 919 40.0
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.1e-114 418.7 656 49.2
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 3.3e-114 417.2 919 38.6
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 3.7e-113 413.7 923 40.0
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 4.5e-111 406.8 923 38.8
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.6e-103 380.9 403 57.6
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 2.9e-102 377.5 916 38.5
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 2.5e-101 374.4 916 38.6
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 3.7e-89 334.0 876 35.4
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 9.4e-85 319.3 1008 34.4
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 3.2e-77 294.3 308 51.3
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.0e-71 275.0 846 33.6
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 1.1e-64 252.7 351 43.3
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 3.5e-63 247.7 376 41.5
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.7e-62 245.4 356 43.8
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.5e-61 242.3 296 47.3
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 5.2e-59 233.8 444 42.3
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.4e-58 231.1 297 47.1
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 1.1e-53 216.1 330 41.5
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 1.1e-48 199.5 262 60.7
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 2.4e-48 198.4 228 50.4
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 1.2e-47 196.1 515 34.4
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.6e-46 190.3 275 42.5
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 1.4e-43 182.6 97 96.9
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 4.0e-43 181.0 340 37.6
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 4.0e-43 181.0 154 57.1
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 5.4e-40 170.6 183 53.6
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 4.7e-36 157.5 310 34.5
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.2e-17 95.5 155 41.3
SEGI_26240 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.4e-09 67.4 329 24.6


User provided reference genes

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