Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 7.0e-76 287.3 160 100.0
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.1e-68 263.5 195 79.5
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.6e-65 251.1 193 76.7
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 3.4e-54 215.3 195 68.7
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.6e-32 143.3 191 49.7
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 5.3e-31 138.3 199 47.7
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.3e-29 133.7 195 47.2
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.7e-29 133.3 197 45.2
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 2.2e-29 132.9 195 46.2
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.9e-29 132.5 195 47.2
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.1e-28 130.6 202 45.0
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.1e-28 130.6 194 46.4
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.1e-28 130.6 195 46.7
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.9e-28 129.8 198 47.0
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 3.2e-28 129.0 204 45.6
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 7.1e-28 127.9 196 45.4
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.6e-27 126.7 201 46.3
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 2.1e-27 126.3 198 45.5
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 4.6e-27 125.2 182 50.0
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.6e-27 125.2 193 47.7
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.0e-27 124.8 190 50.5
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.3e-26 123.6 206 45.6
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.3e-26 122.9 197 43.1
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 3.0e-26 122.5 197 45.2
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 3.0e-26 122.5 180 47.2
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 5.1e-26 121.7 192 45.8
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 8.7e-26 120.9 193 45.1
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 8.7e-26 120.9 194 42.8
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.1e-25 120.6 196 45.9
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-25 120.6 196 45.9
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.1e-25 120.6 196 45.9
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.1e-25 120.6 196 43.4
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.5e-25 120.2 197 43.7
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.5e-25 120.2 191 47.1
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.9e-25 119.8 187 46.5
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 3.3e-25 119.0 198 43.9
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 4.3e-25 118.6 187 46.5
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 4.3e-25 118.6 206 43.2
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 5.6e-25 118.2 193 44.6
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 5.6e-25 118.2 211 44.1
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.3e-24 117.1 198 44.9
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-24 116.7 187 46.0
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.6e-24 116.7 180 46.7
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.8e-23 113.2 197 45.7
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.8e-23 113.2 194 42.3
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 2.4e-23 112.8 218 39.0
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 2.4e-23 112.8 171 47.4
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.4e-23 112.8 182 45.1
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 4.0e-23 112.1 216 39.8
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.0e-23 112.1 182 45.1
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.3e-23 111.7 188 43.6
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 5.3e-23 111.7 198 39.9
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 6.9e-23 111.3 177 45.2
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 9.0e-23 110.9 195 43.6
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 9.0e-23 110.9 175 44.6
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 2.0e-22 109.8 188 43.6
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 2.6e-22 109.4 195 40.5
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 2.6e-22 109.4 198 41.9
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 3.4e-22 109.0 193 40.9
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 7.6e-22 107.8 199 42.7
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.3e-21 107.1 210 38.6
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.2e-21 106.3 122 54.9
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 2.2e-21 106.3 89 66.3
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.8e-21 105.5 216 38.4
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.1e-20 104.0 215 38.6
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.1e-20 104.0 215 37.2
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.4e-20 103.6 221 42.1
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.9e-20 103.2 212 39.6
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 3.2e-20 102.4 123 52.8
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 3.2e-20 102.4 193 41.5
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.2e-20 102.4 177 44.6
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.2e-20 102.4 177 44.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 3.2e-20 102.4 212 36.8
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 4.2e-20 102.1 120 51.7
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 4.2e-20 102.1 120 51.7
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 4.2e-20 102.1 213 37.6
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 9.3e-20 100.9 177 44.1
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 9.3e-20 100.9 89 64.0
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-19 100.5 120 50.8
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 1.6e-19 100.1 222 36.5
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 2.1e-19 99.8 196 38.3
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 2.7e-19 99.4 123 52.0
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 2.7e-19 99.4 219 36.1
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 4.6e-19 98.6 219 37.0
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 4.6e-19 98.6 229 34.9
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.0e-18 97.4 212 37.7
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 2.3e-18 96.3 220 35.9
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 6.7e-18 94.7 180 38.9
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.7e-18 94.7 218 35.8
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 6.7e-18 94.7 91 59.3
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 6.7e-18 94.7 210 38.6
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.1e-17 94.0 209 37.8
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.5e-17 93.6 217 35.5
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.9e-17 93.2 221 36.7
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 2.5e-17 92.8 211 39.3
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.3e-17 92.4 182 40.7
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 4.3e-17 92.0 219 35.2
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 5.6e-17 91.7 166 41.6
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 5.6e-17 91.7 210 36.2
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 5.6e-17 91.7 120 49.2
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 7.4e-17 91.3 214 32.7
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 9.6e-17 90.9 224 33.5
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 3.7e-16 89.0 209 35.9
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 8.2e-16 87.8 123 46.3
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-15 87.4 188 37.8
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 1.1e-15 87.4 220 33.6
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.4e-15 87.0 198 36.4
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.4e-15 87.0 81 59.3
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.8e-15 86.7 201 32.3
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.4e-15 86.3 219 34.7
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.4e-15 86.3 196 36.2
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 2.4e-15 86.3 227 33.0
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 6.9e-15 84.7 84 58.3
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 9.0e-15 84.3 214 35.0
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.2e-14 84.0 223 34.1
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 2.0e-14 83.2 83 57.8
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.0e-13 80.9 91 50.5
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.0e-13 80.9 196 36.2
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.3e-13 80.5 85 52.9
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.3e-13 80.5 125 43.2
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.7e-13 80.1 220 31.4
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.7e-13 80.1 255 30.6
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.9e-13 79.3 225 33.8
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.9e-13 79.3 79 55.7
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 6.5e-13 78.2 77 55.8
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.9e-12 76.6 191 36.1
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 3.2e-12 75.9 221 31.2
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.2e-12 75.9 80 53.8
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 7.1e-12 74.7 121 41.3
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 9.3e-12 74.3 189 33.9
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 9.3e-12 74.3 202 32.2
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.6e-11 73.6 217 35.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.1e-11 73.2 149 40.3
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 4.6e-11 72.0 80 47.5
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 4.6e-11 72.0 91 53.8
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 7.9e-11 71.2 205 31.2
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.0e-10 70.9 186 33.9
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.8e-10 70.1 182 36.3
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.9e-09 66.6 80 47.5
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-09 66.6 110 38.2
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-09 66.6 80 47.5
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.9e-09 66.6 80 47.5
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.9e-09 66.6 110 38.2
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.9e-09 66.6 80 47.5
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.9e-09 66.6 204 31.9
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 2.5e-09 66.2 113 40.7
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 2.5e-09 66.2 113 40.7
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 5.7e-09 65.1 202 33.7
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 7.4e-09 64.7 82 46.3
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 7.4e-09 64.7 121 40.5
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 7.4e-09 64.7 79 46.8
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 7.4e-09 64.7 149 33.6
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.7e-09 64.3 184 29.3
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 9.7e-09 64.3 70 51.4
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.6e-08 63.5 174 32.2
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.6e-08 63.5 203 29.6
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.6e-08 63.5 76 50.0
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.8e-08 62.8 185 31.9
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 2.8e-08 62.8 193 30.1
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 4.8e-08 62.0 60 53.3
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.4e-07 60.5 101 39.6
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.2e-06 57.4 185 31.4
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.5e-06 57.0 195 29.7
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.5e-06 57.0 42 66.7
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 4.5e-06 55.5 105 41.0
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.9e-06 55.1 162 35.8
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 7.7e-06 54.7 161 31.1
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.0e-05 54.3 166 33.1


User provided reference genes

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