Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 1.1e-212 743.0 364 100.0
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 1.0e-207 726.5 364 97.3
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 2.7e-200 701.8 362 93.6
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 6.3e-197 690.6 361 91.7
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 7.2e-177 624.0 363 83.5
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 6.1e-176 620.9 362 82.0
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 3.0e-175 618.6 363 82.6
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 6.7e-175 617.5 366 81.7
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 2.6e-174 615.5 363 81.8
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 4.4e-174 614.8 368 80.2
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 5.7e-174 614.4 363 82.4
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 7.4e-174 614.0 364 81.6
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 2.8e-173 612.1 363 81.0
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 3.7e-173 611.7 362 81.5
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 8.2e-173 610.5 362 80.9
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.1e-172 610.1 363 81.5
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.1e-172 610.1 362 81.8
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.8e-172 609.4 366 80.1
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 7.0e-172 607.4 363 81.3
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 7.0e-172 607.4 361 81.2
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.6e-171 606.3 363 79.3
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 4.5e-171 604.7 359 80.5
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 7.7e-171 604.0 367 78.5
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.3e-170 603.2 369 78.9
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 2.9e-170 602.1 369 78.6
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 3.8e-170 601.7 361 78.7
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 1.5e-169 599.7 364 78.8
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.2e-169 598.6 366 78.4
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 5.5e-169 597.8 361 79.5
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 1.2e-168 596.7 362 79.3
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.6e-168 596.3 365 77.8
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 2.1e-168 595.9 362 79.6
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.6e-168 595.1 361 78.7
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 8.0e-168 594.0 359 78.3
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.4e-167 593.2 357 79.3
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.4e-167 593.2 362 77.6
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.8e-167 592.8 365 78.4
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 5.2e-167 591.3 362 77.9
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 5.2e-167 591.3 390 73.8
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 5.2e-167 591.3 358 79.1
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 6.7e-167 590.9 364 78.3
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 8.8e-167 590.5 362 77.9
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 8.8e-167 590.5 362 77.9
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 8.8e-167 590.5 359 78.6
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 8.8e-167 590.5 364 78.3
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 2.0e-166 589.3 362 77.1
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 2.0e-166 589.3 362 78.2
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 2.0e-166 589.3 361 78.1
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.0e-166 589.3 361 78.1
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.3e-166 588.6 361 78.1
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 4.4e-166 588.2 359 78.0
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 5.7e-166 587.8 361 78.7
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 5.7e-166 587.8 353 80.2
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 7.5e-166 587.4 357 78.4
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 9.7e-166 587.0 359 79.1
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.3e-165 586.6 359 78.0
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.7e-165 586.3 361 77.8
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.2e-165 585.9 390 73.3
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 3.7e-165 585.1 360 77.8
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 6.3e-165 584.3 359 78.6
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 8.2e-165 583.9 362 76.0
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.4e-164 583.2 366 76.0
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 1.4e-164 583.2 362 76.5
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.4e-164 583.2 359 78.6
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.4e-164 583.2 362 75.1
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.8e-164 582.8 362 76.8
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.8e-164 582.8 366 75.7
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.8e-164 582.8 366 75.7
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 2.4e-164 582.4 362 75.7
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.1e-164 582.0 361 75.9
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 4.1e-164 581.6 359 78.8
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 5.3e-164 581.3 360 78.3
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 5.3e-164 581.3 361 77.0
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 7.0e-164 580.9 362 76.8
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.6e-163 579.7 362 75.7
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.6e-163 579.7 356 77.2
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 1.6e-163 579.7 363 76.6
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 2.0e-163 579.3 359 77.4
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 4.5e-163 578.2 358 78.5
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.0e-162 577.0 358 75.4
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 1.3e-162 576.6 362 76.0
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 2.2e-162 575.9 358 76.8
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 6.5e-162 574.3 358 75.1
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.5e-161 573.2 369 73.7
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.9e-161 572.8 359 77.2
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 3.2e-161 572.0 360 75.0
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 5.5e-161 571.2 359 76.3
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 2.1e-160 569.3 368 73.1
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 3.6e-160 568.5 369 73.4
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 1.4e-159 566.6 369 73.2
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 3.0e-159 565.5 358 73.7
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.2e-158 563.5 359 75.2
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 2.0e-158 562.8 416 69.2
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 2.8e-157 558.9 439 65.1
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 9.1e-156 553.9 354 76.6
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.7e-154 549.7 453 62.3
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.5e-153 545.8 328 79.9
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.4e-151 540.0 358 71.2
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 4.0e-151 538.5 378 68.3
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.3e-149 531.2 355 69.9
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 2.4e-148 529.3 455 58.5
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 7.0e-148 527.7 353 72.5
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 7.0e-148 527.7 358 69.6
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 1.3e-146 523.5 359 69.6
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 8.6e-146 520.8 359 67.4
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 1.8e-143 513.1 387 68.7
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 3.1e-143 512.3 361 67.6
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 4.0e-143 511.9 357 67.8
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 2.0e-142 509.6 361 67.0
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 9.8e-142 507.3 344 75.0
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 1.6e-139 500.0 364 64.8
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.5e-137 493.4 274 85.4
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.5e-137 492.7 520 51.7
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 1.6e-136 490.0 363 62.3
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 6.8e-135 484.6 356 63.8
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 1.5e-126 456.8 255 84.7
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 9.2e-124 447.6 270 78.9
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 6.2e-120 434.9 385 55.8
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 1.2e-115 420.6 275 73.8
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.9e-105 386.7 346 55.8
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 3.6e-104 382.5 348 54.6
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 8.1e-104 381.3 380 50.3
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.0e-98 362.8 241 67.6
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 1.9e-84 317.0 224 67.4
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 6.7e-82 308.5 271 59.4
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.5e-81 306.6 200 72.5
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 7.7e-78 295.0 177 77.4
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 7.2e-76 288.5 181 78.5
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 2.1e-75 287.0 164 82.9
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.1e-73 281.2 161 83.2
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 4.1e-71 272.7 361 45.2
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 3.6e-67 259.6 183 67.8
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 1.0e-58 231.5 175 60.6
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.5e-52 211.1 118 83.9
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 9.4e-44 181.8 169 57.4
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 2.1e-43 180.6 106 77.4
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 5.5e-36 156.0 107 73.8
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 1.6e-35 154.5 89 84.3
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 3.6e-27 126.7 177 42.4
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 2.6e-25 120.6 88 63.6
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.6e-19 101.3 57 84.2
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.1e-18 98.6 232 29.3
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.5e-17 94.7 55 76.4
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 3.4e-17 93.6 62 67.7
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 4.4e-17 93.2 77 59.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.3e-16 91.7 83 56.6
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 6.0e-14 82.8 48 83.3
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 3.3e-12 77.0 47 72.3
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 2.9e-08 63.9 74 44.6
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 3.5e-06 57.0 43 58.1
QL11p040202 Quercus lobata HOM05D000018 ORTHO05D001172 6.0e-06 56.2 355 22.3


User provided reference genes

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