Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.1e-30 136.0 67 100.0
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 2.1e-29 131.7 65 96.9
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 8.7e-28 126.3 65 90.8
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 6.9e-25 116.7 67 79.1
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.5e-24 115.5 65 81.5
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 3.4e-24 114.4 65 80.0
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 5.8e-24 113.6 64 84.4
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.8e-24 113.6 66 77.3
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 7.6e-24 113.2 66 77.3
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 7.6e-24 113.2 66 77.3
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 1.4e-22 109.0 65 75.4
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.4e-22 109.0 64 76.6
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 2.4e-22 108.2 64 76.6
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 2.4e-22 108.2 65 76.9
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.2e-22 107.8 64 78.1
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 4.2e-22 107.5 64 78.1
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 4.2e-22 107.5 66 74.2
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 4.2e-22 107.5 66 74.2
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 7.1e-22 106.7 65 72.3
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.6e-21 105.5 66 72.7
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 2.7e-21 104.8 64 73.4
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 2.7e-21 104.8 64 76.6
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 3.5e-21 104.4 65 76.9
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 4.6e-21 104.0 64 76.6
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 6.0e-21 103.6 64 71.9
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 7.9e-21 103.2 64 75.0
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 1.0e-20 102.8 66 68.2
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 1.3e-20 102.4 65 75.4
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.3e-20 102.4 66 68.2
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 3.0e-20 101.3 64 73.4
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 5.1e-20 100.5 64 73.4
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 5.1e-20 100.5 64 73.4
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 5.1e-20 100.5 66 66.7
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 8.7e-20 99.8 66 71.2
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 1.5e-19 99.0 64 71.9
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 1.9e-19 98.6 66 71.2
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 2.5e-19 98.2 66 66.7
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 3.3e-19 97.8 66 69.7
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 9.6e-19 96.3 64 68.8
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 9.6e-19 96.3 64 68.8
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.1e-18 95.1 65 69.2
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.1e-18 95.1 65 69.2
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 4.8e-18 94.0 65 67.7
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 8.1e-18 93.2 66 63.6
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 1.4e-17 92.4 65 67.7
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 1.4e-17 92.4 63 66.7
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 4.0e-17 90.9 64 68.8
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 9.0e-17 89.7 65 63.1
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 9.0e-17 89.7 66 62.1
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 9.0e-17 89.7 65 63.1
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 9.0e-17 89.7 65 63.1
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 2.6e-16 88.2 65 61.5
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 4.5e-16 87.4 65 61.5
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 5.8e-16 87.0 65 60.0
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 5.8e-16 87.0 65 60.0
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 5.8e-16 87.0 62 67.7
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 7.6e-16 86.7 62 69.4
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 7.6e-16 86.7 62 66.1
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 1.3e-15 85.9 65 60.0
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 1.3e-15 85.9 65 60.0
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 1.7e-15 85.5 60 65.0
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 1.7e-15 85.5 65 60.0
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 2.2e-15 85.1 62 61.3
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 2.9e-15 84.7 65 60.0
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 4.9e-15 84.0 58 63.8
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 6.4e-15 83.6 60 61.7
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 8.4e-15 83.2 62 59.7
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 8.4e-15 83.2 62 59.7
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.4e-14 82.4 65 61.5
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.4e-14 82.4 66 56.1
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 1.4e-14 82.4 62 62.9
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.9e-14 82.0 66 57.6
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 3.2e-14 81.3 65 61.5
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.2e-14 81.3 56 71.4
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 4.2e-14 80.9 61 65.6
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 4.2e-14 80.9 66 59.1
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 4.2e-14 80.9 65 60.0
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.2e-14 80.9 66 57.6
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.2e-14 80.9 66 57.6
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 5.5e-14 80.5 58 70.7
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 5.5e-14 80.5 58 70.7
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 5.5e-14 80.5 62 62.9
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 7.1e-14 80.1 64 60.9
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 7.1e-14 80.1 61 65.6
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 7.1e-14 80.1 61 65.6
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 7.1e-14 80.1 62 64.5
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 7.1e-14 80.1 67 53.7
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 7.1e-14 80.1 67 53.7
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 1.2e-13 79.3 60 60.0
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.2e-13 79.3 65 60.0
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 2.1e-13 78.6 61 63.9
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.1e-13 78.6 61 63.9
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 2.7e-13 78.2 62 61.3
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 3.5e-13 77.8 62 59.7
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 6.0e-13 77.0 65 55.4
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 6.0e-13 77.0 65 55.4
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.0e-13 77.0 62 59.7
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 6.0e-13 77.0 62 59.7
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 7.9e-13 76.6 62 61.3
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 7.9e-13 76.6 49 75.5
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 7.9e-13 76.6 62 59.7
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 7.9e-13 76.6 51 72.5
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.3e-12 75.9 59 59.3
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 1.3e-12 75.9 51 68.6
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 1.8e-12 75.5 65 53.8
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 1.8e-12 75.5 65 53.8
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 1.8e-12 75.5 65 53.8
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.8e-12 75.5 58 60.3
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 2.3e-12 75.1 57 64.9
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 2.3e-12 75.1 61 59.0
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 2.3e-12 75.1 62 59.7
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 3.0e-12 74.7 66 50.0
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 3.9e-12 74.3 62 56.5
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 3.9e-12 74.3 62 56.5
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 3.9e-12 74.3 58 58.6
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 3.9e-12 74.3 61 59.0
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 5.1e-12 73.9 62 58.1
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 5.1e-12 73.9 57 63.2
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.7e-12 73.6 60 56.7
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 8.7e-12 73.2 62 58.1
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 1.1e-11 72.8 62 54.8
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.5e-11 72.4 61 55.7
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 1.9e-11 72.0 65 53.8
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 2.5e-11 71.6 57 61.4
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.3e-11 71.2 53 60.4
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.3e-11 71.2 53 60.4
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 3.3e-11 71.2 64 57.8
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.3e-11 71.2 54 63.0
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 3.3e-11 71.2 62 58.1
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 4.3e-11 70.9 62 53.2
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 4.3e-11 70.9 62 53.2
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.3e-10 69.3 54 61.1
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.6e-10 68.9 67 52.2
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 1.6e-10 68.9 62 54.8
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 2.8e-10 68.2 66 51.5
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 3.7e-10 67.8 51 64.7
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 8.2e-10 66.6 64 53.1
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.4e-09 65.9 57 56.1
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 1.4e-09 65.9 65 52.3
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 2.4e-09 65.1 54 55.6
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 3.1e-09 64.7 49 61.2
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 3.1e-09 64.7 49 61.2
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 5.3e-09 63.9 62 56.5
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 6.9e-09 63.5 62 50.0
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 9.0e-09 63.2 67 47.8
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 9.0e-09 63.2 62 48.4
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 1.2e-08 62.8 62 50.0
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.2e-08 62.8 62 48.4
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 1.5e-08 62.4 64 48.4
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 1.5e-08 62.4 39 79.5
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 7.6e-08 60.1 51 58.8
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 1.0e-07 59.7 49 57.1
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 1.0e-07 59.7 51 52.9
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 1.7e-07 58.9 65 46.2
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 4.9e-07 57.4 49 53.1
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 8.4e-07 56.6 58 51.7
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 1.4e-06 55.8 58 51.7
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 1.4e-06 55.8 58 51.7
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.5e-06 55.1 47 57.4
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 3.2e-06 54.7 58 51.7
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 4.2e-06 54.3 46 54.3
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 4.2e-06 54.3 58 51.7
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 5.5e-06 53.9 58 51.7
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 5.5e-06 53.9 58 53.4


User provided reference genes

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