Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.5e-44 182.6 98 100.0
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 9.4e-31 136.7 109 68.8
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 3.5e-25 118.2 115 60.0
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 1.3e-24 116.3 126 51.6
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 1.3e-24 116.3 80 70.0
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 1.3e-24 116.3 80 70.0
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 2.2e-24 115.5 96 63.5
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 5.0e-24 114.4 94 62.8
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 6.5e-24 114.0 125 49.6
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 1.1e-23 113.2 126 50.0
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 3.2e-23 111.7 117 52.1
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 3.2e-23 111.7 81 70.4
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 3.2e-23 111.7 83 65.1
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 4.2e-23 111.3 119 52.9
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 9.4e-23 110.2 82 68.3
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 1.6e-22 109.4 125 49.6
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 3.6e-22 108.2 83 66.3
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 6.1e-22 107.5 118 53.4
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 8.0e-22 107.1 117 51.3
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 1.4e-21 106.3 111 53.2
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 2.3e-21 105.5 125 48.8
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 2.3e-21 105.5 83 62.7
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 3.0e-21 105.1 96 60.4
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 4.0e-21 104.8 80 65.0
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 4.0e-21 104.8 124 46.8
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 5.2e-21 104.4 82 67.1
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 6.7e-21 104.0 115 50.4
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 6.7e-21 104.0 102 55.9
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 6.7e-21 104.0 82 67.1
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 6.7e-21 104.0 82 67.1
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 6.7e-21 104.0 80 66.2
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 6.7e-21 104.0 84 64.3
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 6.7e-21 104.0 94 57.4
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 6.7e-21 104.0 94 57.4
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 6.7e-21 104.0 116 50.9
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 6.7e-21 104.0 83 63.9
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 6.7e-21 104.0 80 63.8
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 8.8e-21 103.6 83 65.1
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 8.8e-21 103.6 121 47.1
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 8.8e-21 103.6 121 47.1
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 8.8e-21 103.6 121 47.1
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.1e-20 103.2 126 46.0
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 1.1e-20 103.2 80 65.0
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 1.1e-20 103.2 123 49.6
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 1.5e-20 102.8 82 64.6
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 1.5e-20 102.8 116 50.9
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 2.0e-20 102.4 79 67.1
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 2.6e-20 102.1 90 57.8
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 2.6e-20 102.1 113 53.1
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 3.3e-20 101.7 115 50.4
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 3.3e-20 101.7 116 49.1
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 4.4e-20 101.3 116 49.1
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 4.4e-20 101.3 116 49.1
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 5.7e-20 100.9 84 58.3
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 5.7e-20 100.9 104 57.7
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.7e-20 100.9 126 45.2
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 7.4e-20 100.5 116 49.1
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 9.7e-20 100.1 80 63.8
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 9.7e-20 100.1 84 57.1
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 1.3e-19 99.8 81 58.0
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.3e-19 99.8 61 80.3
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.3e-19 99.8 116 49.1
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.3e-19 99.8 82 59.8
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 1.7e-19 99.4 82 61.0
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 2.2e-19 99.0 82 62.2
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 2.2e-19 99.0 119 47.9
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 2.8e-19 98.6 119 47.9
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 3.7e-19 98.2 82 59.8
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 3.7e-19 98.2 82 64.6
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 4.8e-19 97.8 88 59.1
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 4.8e-19 97.8 83 59.0
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 4.8e-19 97.8 80 65.0
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 6.3e-19 97.4 67 70.1
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 8.2e-19 97.1 94 54.3
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.4e-18 96.3 82 56.1
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.4e-18 96.3 83 56.6
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.8e-18 95.9 80 60.0
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 1.8e-18 95.9 82 61.0
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 1.8e-18 95.9 83 61.4
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.4e-18 95.5 107 49.5
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 2.4e-18 95.5 84 57.1
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 3.1e-18 95.1 79 63.3
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 3.1e-18 95.1 119 48.7
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 3.1e-18 95.1 119 48.7
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 5.3e-18 94.4 83 61.4
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 5.3e-18 94.4 83 57.8
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 7.0e-18 94.0 114 48.2
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 7.0e-18 94.0 82 58.5
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 9.1e-18 93.6 115 47.8
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 9.1e-18 93.6 82 56.1
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.2e-17 93.2 83 54.2
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 2.0e-17 92.4 82 56.1
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.0e-17 92.4 122 41.8
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 2.0e-17 92.4 65 69.2
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 2.0e-17 92.4 80 57.5
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.6e-17 92.0 102 48.0
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 2.6e-17 92.0 119 44.5
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 2.6e-17 92.0 84 56.0
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 3.5e-17 91.7 118 46.6
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 3.5e-17 91.7 79 57.0
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 3.5e-17 91.7 82 52.4
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 4.5e-17 91.3 118 45.8
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 4.5e-17 91.3 119 43.7
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 5.9e-17 90.9 113 46.0
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 7.7e-17 90.5 118 45.8
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.7e-17 90.5 82 54.9
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 7.7e-17 90.5 96 53.1
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.0e-16 90.1 79 55.7
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.0e-16 90.1 116 45.7
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 1.3e-16 89.7 80 57.5
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 1.3e-16 89.7 118 46.6
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 1.3e-16 89.7 118 45.8
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 1.7e-16 89.4 114 46.5
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 1.7e-16 89.4 114 47.4
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 1.7e-16 89.4 114 47.4
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 1.7e-16 89.4 118 44.9
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 1.7e-16 89.4 114 46.5
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 1.7e-16 89.4 118 43.2
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 1.7e-16 89.4 119 44.5
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 2.2e-16 89.0 115 46.1
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 2.2e-16 89.0 118 44.1
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 2.2e-16 89.0 115 46.1
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 2.2e-16 89.0 91 54.9
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 2.9e-16 88.6 119 44.5
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 3.8e-16 88.2 82 53.7
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.8e-16 88.2 120 43.3
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 3.8e-16 88.2 81 58.0
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 5.0e-16 87.8 65 69.2
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 5.0e-16 87.8 118 42.4
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 5.0e-16 87.8 109 47.7
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 5.0e-16 87.8 119 40.3
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 8.5e-16 87.0 66 69.7
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 1.1e-15 86.7 92 55.4
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 1.5e-15 86.3 119 42.9
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 1.9e-15 85.9 80 52.5
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 1.9e-15 85.9 80 52.5
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 2.5e-15 85.5 98 48.0
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 3.2e-15 85.1 134 38.8
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 3.2e-15 85.1 118 43.2
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 7.2e-15 84.0 79 51.9
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 9.4e-15 83.6 82 50.0
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.2e-14 83.2 108 44.4
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 1.6e-14 82.8 65 64.6
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 2.1e-14 82.4 60 68.3
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 2.7e-14 82.0 79 50.6
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 3.6e-14 81.6 90 51.1
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 6.1e-14 80.9 65 60.0
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 5.2e-13 77.8 95 46.3
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 2.0e-12 75.9 82 46.3
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 3.4e-12 75.1 91 46.2
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.2e-11 72.4 55 69.1
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.8e-10 69.3 66 53.0
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 9.1e-10 67.0 53 60.4
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.6e-09 66.2 53 60.4
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.0e-09 65.9 53 58.5
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 4.5e-09 64.7 56 55.4
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.9e-09 64.3 53 56.6
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 2.9e-08 62.0 79 38.0
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 2.9e-08 62.0 79 38.0
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 2.5e-07 58.9 82 39.0
arahy.Tifrunner.gnm1.ann1.4Z64RL Arachis hypogaea HOM05D003972 ORTHO05D082339 9.4e-07 57.0 76 43.4


User provided reference genes

Program Settings