Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.8e-57 225.7 116 100.0
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 2.5e-46 188.7 113 86.7
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 2.6e-40 168.7 96 87.5
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.3e-39 166.4 96 85.4
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 2.9e-39 165.2 96 84.4
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 8.5e-39 163.7 96 85.4
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 8.5e-39 163.7 105 77.1
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 3.2e-38 161.8 105 76.2
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 5.5e-38 161.0 96 84.4
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 7.2e-38 160.6 105 74.3
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 1.2e-37 159.8 96 81.2
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 1.6e-37 159.5 105 73.3
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 1.6e-37 159.5 105 75.2
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.6e-37 159.5 105 74.3
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 2.1e-37 159.1 96 79.2
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 2.1e-37 159.1 119 73.1
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 2.7e-37 158.7 105 74.3
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 2.7e-37 158.7 105 75.2
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 2.7e-37 158.7 105 75.2
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 3.6e-37 158.3 97 77.3
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 3.6e-37 158.3 105 73.3
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 3.6e-37 158.3 105 73.3
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 3.6e-37 158.3 105 74.3
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 4.7e-37 157.9 105 73.3
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 6.1e-37 157.5 105 74.3
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 7.9e-37 157.1 105 75.2
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 7.9e-37 157.1 105 74.3
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 7.9e-37 157.1 96 81.2
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 1.4e-36 156.4 105 73.3
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 1.4e-36 156.4 104 73.1
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.4e-36 156.4 105 73.3
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.8e-36 156.0 105 76.2
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.3e-36 155.6 105 72.4
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.3e-36 155.6 105 72.4
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 3.0e-36 155.2 96 79.2
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 3.0e-36 155.2 98 75.5
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 3.0e-36 155.2 96 78.1
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 3.0e-36 155.2 105 73.3
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 3.9e-36 154.8 96 78.1
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 3.9e-36 154.8 105 72.4
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 5.1e-36 154.5 96 79.2
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 5.1e-36 154.5 106 69.8
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 5.1e-36 154.5 106 69.8
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 6.7e-36 154.1 96 76.0
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 6.7e-36 154.1 96 80.2
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 8.8e-36 153.7 96 78.1
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 8.8e-36 153.7 105 74.3
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.1e-35 153.3 106 68.9
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.5e-35 152.9 105 71.4
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.6e-35 152.1 105 69.5
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 3.3e-35 151.8 105 70.5
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 3.3e-35 151.8 106 67.9
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 3.3e-35 151.8 105 71.4
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 3.3e-35 151.8 106 67.9
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 4.4e-35 151.4 96 78.1
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.4e-35 151.4 105 72.4
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 5.7e-35 151.0 96 75.0
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 9.7e-35 150.2 96 76.0
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 1.3e-34 149.8 105 69.5
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 3.7e-34 148.3 105 73.3
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 3.7e-34 148.3 96 76.0
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 4.8e-34 147.9 96 76.0
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 6.3e-34 147.5 105 69.5
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 8.2e-34 147.1 105 67.6
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.4e-33 146.4 98 73.5
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 1.8e-33 146.0 96 74.0
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 1.8e-33 146.0 96 72.9
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 2.4e-33 145.6 105 67.6
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 4.1e-33 144.8 98 73.5
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 7.0e-33 144.1 96 72.9
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.0e-33 144.1 96 72.9
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.0e-33 144.1 96 72.9
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.0e-33 144.1 96 72.9
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.0e-33 144.1 96 72.9
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 7.0e-33 144.1 105 67.6
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 7.0e-33 144.1 105 66.7
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 1.2e-32 143.3 96 71.9
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 2.0e-32 142.5 96 72.9
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 2.0e-32 142.5 96 68.8
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 2.6e-32 142.1 105 64.8
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 7.7e-32 140.6 105 66.7
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 7.7e-32 140.6 105 66.7
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 1.3e-31 139.8 105 63.8
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 1.3e-31 139.8 105 67.6
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 1.7e-31 139.4 137 56.9
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 3.8e-31 138.3 97 64.9
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 5.0e-31 137.9 96 70.8
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.0e-31 137.9 96 70.8
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 5.0e-31 137.9 105 62.9
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 5.0e-31 137.9 105 62.9
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 6.5e-31 137.5 95 68.4
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 6.5e-31 137.5 107 63.6
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 6.5e-31 137.5 105 63.8
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 8.5e-31 137.1 96 69.8
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 1.1e-30 136.7 94 76.6
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 1.5e-30 136.3 96 69.8
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 1.5e-30 136.3 98 65.3
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 1.5e-30 136.3 96 65.6
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 1.9e-30 136.0 98 66.3
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 1.9e-30 136.0 98 66.3
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 1.9e-30 136.0 98 66.3
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 1.9e-30 136.0 98 66.3
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.9e-30 136.0 98 66.3
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 1.9e-30 136.0 98 66.3
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 1.9e-30 136.0 98 66.3
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 1.9e-30 136.0 98 66.3
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 1.9e-30 136.0 98 66.3
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 1.9e-30 136.0 98 66.3
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 1.9e-30 136.0 98 66.3
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 1.9e-30 136.0 98 66.3
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.9e-30 136.0 96 69.8
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 1.9e-30 136.0 98 66.3
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 1.9e-30 136.0 105 63.8
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 2.5e-30 135.6 141 51.8
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 3.2e-30 135.2 105 62.9
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 3.2e-30 135.2 105 63.8
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 4.2e-30 134.8 98 65.3
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 4.2e-30 134.8 98 65.3
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 4.2e-30 134.8 98 65.3
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 4.2e-30 134.8 98 65.3
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 4.2e-30 134.8 107 59.8
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 4.2e-30 134.8 96 66.7
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 5.5e-30 134.4 105 64.8
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 5.5e-30 134.4 105 61.9
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 5.5e-30 134.4 105 61.0
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 7.2e-30 134.0 98 65.3
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.2e-29 133.3 98 65.3
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 1.2e-29 133.3 104 62.5
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 1.6e-29 132.9 98 64.3
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.6e-29 131.7 96 67.7
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 3.6e-29 131.7 105 60.0
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 3.6e-29 131.7 98 63.3
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 3.6e-29 131.7 107 59.8
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 6.1e-29 131.0 120 59.2
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 3.0e-28 128.6 158 49.4
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 3.9e-28 128.3 128 56.2
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 5.2e-28 127.9 96 61.5
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 3.3e-27 125.2 96 69.8
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 4.4e-27 124.8 105 60.0
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 5.7e-27 124.4 103 62.1
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 7.4e-27 124.0 96 58.3
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 3.7e-26 121.7 98 64.3
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.1e-25 120.2 100 61.0
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 2.9e-23 112.1 67 82.1
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 1.1e-22 110.2 87 66.7
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 1.5e-22 109.8 75 70.7
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.2e-21 106.7 100 56.0
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 1.4e-20 103.2 196 35.7
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 1.2e-19 100.1 59 81.4
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 1.2e-19 100.1 59 81.4
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.2e-19 100.1 74 68.9
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 9.7e-19 97.1 59 78.0
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 8.3e-18 94.0 98 46.9
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 8.3e-18 94.0 58 75.9
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 1.1e-17 93.6 67 64.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 7.0e-17 90.9 66 65.2
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-16 87.8 66 63.6
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 3.8e-15 85.1 100 44.0
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 7.2e-14 80.9 98 40.8
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 7.2e-14 80.9 98 40.8
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.6e-13 79.7 100 41.0
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 6.8e-12 74.3 112 34.8
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 8.8e-12 73.9 67 59.7
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 4.4e-11 71.6 96 36.5
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 4.8e-10 68.2 91 37.4
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 2.7e-08 62.4 41 80.5
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 2.7e-08 62.4 99 36.4
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 1.0e-07 60.5 37 81.1
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 5.5e-06 54.7 86 32.6
Lsat_1_v5_gn_5_111580 Lactuca sativa HOM05D000217 ORTHO05D000121 5.5e-06 54.7 40 62.5


User provided reference genes

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