Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 2.3e-66 255.4 127 100.0
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 1.2e-62 243.0 127 94.5
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 2.1e-51 205.7 127 82.7
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 3.8e-40 168.3 127 70.9
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 3.3e-36 155.2 127 63.8
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 2.5e-23 112.5 127 52.0
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 1.6e-22 109.8 127 51.2
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 6.0e-22 107.8 123 48.0
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 3.0e-21 105.5 128 49.2
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 3.9e-21 105.1 127 48.8
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 3.9e-21 105.1 121 50.4
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 1.5e-20 103.2 127 48.0
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 2.5e-20 102.4 130 48.5
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 4.3e-20 101.7 126 49.2
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 4.3e-20 101.7 126 49.2
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 2.8e-19 99.0 127 47.2
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 2.8e-19 99.0 128 47.7
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 2.8e-19 99.0 128 47.7
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 3.1e-18 95.5 127 48.8
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 9.0e-18 94.0 117 47.0
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 1.5e-17 93.2 105 52.4
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 1.5e-17 93.2 105 51.4
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 2.0e-17 92.8 109 50.5
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 2.0e-17 92.8 100 52.0
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 4.5e-17 91.7 93 52.7
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 4.5e-17 91.7 122 46.7
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 4.5e-17 91.7 127 47.2
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 4.5e-17 91.7 128 46.1
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 5.9e-17 91.3 78 61.5
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 1.0e-16 90.5 123 48.8
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 2.2e-16 89.4 55 72.7
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.9e-16 89.0 129 44.2
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 2.9e-16 89.0 129 44.2
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 5.0e-16 88.2 123 45.5
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 6.5e-16 87.8 55 74.5
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 1.1e-15 87.0 128 42.2
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 1.9e-15 86.3 127 44.1
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 2.5e-15 85.9 109 45.0
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 7.2e-15 84.3 125 40.8
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 9.4e-15 84.0 127 40.9
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 1.2e-14 83.6 96 46.9
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 2.1e-14 82.8 75 56.0
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 2.7e-14 82.4 124 41.9
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 2.7e-14 82.4 105 47.6
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 4.6e-14 81.6 130 44.6
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 6.1e-14 81.3 85 54.1
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 6.1e-14 81.3 83 54.2
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.4e-13 80.1 93 48.4
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 1.8e-13 79.7 55 69.1
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 3.0e-13 79.0 85 49.4
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 3.0e-13 79.0 111 48.6
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 6.7e-13 77.8 104 49.0
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 8.8e-13 77.4 123 45.5
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 2.5e-12 75.9 78 51.3
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 4.3e-12 75.1 130 41.5
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 4.3e-12 75.1 101 46.5
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 1.3e-11 73.6 61 59.0
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 1.3e-11 73.6 48 66.7
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.7e-11 73.2 82 52.4
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.7e-11 73.2 82 52.4
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 1.7e-11 73.2 48 68.8
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 2.2e-11 72.8 82 52.4
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 2.8e-11 72.4 79 55.7
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 2.8e-11 72.4 79 55.7
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 3.7e-11 72.0 82 51.2
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 1.4e-10 70.1 88 50.0
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 6.9e-10 67.8 129 38.0
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 2.0e-09 66.2 75 49.3
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 2.0e-09 66.2 77 46.8
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 2.0e-09 66.2 77 46.8
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 4.5e-09 65.1 85 47.1
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 1.7e-08 63.2 54 55.6
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 1.7e-08 63.2 54 55.6
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 2.2e-08 62.8 78 44.9
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 3.8e-08 62.0 69 47.8
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 2.5e-07 59.3 129 36.4
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 4.2e-07 58.5 73 43.8
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 4.7e-06 55.1 53 50.9


User provided reference genes

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