Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 3.5e-233 811.2 404 100.0
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 1.3e-211 739.6 400 93.0
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 2.5e-210 735.3 409 90.0
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 6.3e-190 667.5 404 83.2
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 1.7e-166 589.7 411 70.1
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 1.3e-163 580.1 409 71.1
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 2.5e-162 575.9 407 70.8
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 4.3e-162 575.1 407 70.8
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 5.6e-162 574.7 411 69.3
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 9.5e-162 573.9 412 70.1
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 1.2e-161 573.5 412 69.4
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 8.0e-161 570.9 411 68.6
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 6.8e-160 567.8 412 69.9
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 2.0e-159 566.2 406 69.2
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 4.4e-159 565.1 411 67.4
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.3e-158 563.5 411 67.9
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 1.3e-158 563.5 406 68.7
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 1.7e-158 563.1 412 68.2
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 2.9e-158 562.4 412 68.4
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.9e-158 562.4 411 67.4
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 3.7e-158 562.0 411 69.1
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.1e-157 560.5 412 68.0
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.1e-157 560.5 411 69.3
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 1.8e-157 559.7 410 69.8
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 4.1e-157 558.5 412 67.2
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 5.4e-157 558.1 412 66.7
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.7e-156 555.8 413 67.6
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 2.3e-155 552.7 413 68.5
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 6.6e-155 551.2 411 68.4
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 8.6e-155 550.8 411 65.5
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.9e-154 549.7 406 67.5
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 7.3e-154 547.7 407 68.1
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 9.5e-154 547.4 407 68.6
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.6e-153 546.6 411 67.2
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.0e-153 544.3 407 67.8
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 2.3e-152 542.7 415 67.0
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 3.1e-152 542.3 412 67.5
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 5.2e-152 541.6 411 66.7
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 7.5e-151 537.7 413 65.9
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 3.2e-149 532.3 412 64.8
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 3.2e-149 532.3 413 65.4
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 5.4e-149 531.6 413 65.1
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.2e-148 530.4 410 63.4
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 1.6e-148 530.0 409 65.0
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 2.0e-148 529.6 400 65.5
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 3.5e-148 528.9 422 64.7
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 3.5e-148 528.9 422 64.2
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 7.8e-148 527.7 412 66.3
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.0e-147 527.3 424 63.0
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 8.6e-147 524.2 412 63.6
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 1.9e-146 523.1 409 64.3
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 4.3e-146 521.9 411 65.0
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 7.3e-146 521.2 411 63.3
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 9.5e-146 520.8 416 63.9
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.2e-145 520.4 454 61.2
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 1.6e-145 520.0 409 63.6
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.6e-145 520.0 412 63.1
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 2.8e-145 519.2 412 62.6
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 2.8e-145 519.2 408 62.3
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 6.2e-145 518.1 411 63.5
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 1.8e-144 516.5 412 62.4
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 1.8e-144 516.5 410 62.9
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 6.8e-144 514.6 484 58.3
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.6e-143 512.7 413 63.4
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 2.6e-143 512.7 414 63.8
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 3.4e-143 512.3 420 61.9
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 7.5e-143 511.1 417 62.4
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 2.9e-142 509.2 410 62.4
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 3.7e-142 508.8 409 62.1
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 3.7e-142 508.8 411 61.8
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 4.9e-142 508.4 410 62.2
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 4.9e-142 508.4 411 62.5
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 8.3e-142 507.7 409 64.1
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 1.4e-141 506.9 430 59.5
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 1.9e-141 506.5 409 62.6
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 7.1e-141 504.6 455 60.0
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.7e-140 502.7 402 62.2
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 3.0e-139 499.2 409 62.6
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 3.9e-139 498.8 411 62.8
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 8.6e-139 497.7 410 61.2
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 1.1e-138 497.3 411 62.5
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.1e-138 497.3 411 62.5
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 9.5e-138 494.2 410 60.7
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 8.1e-137 491.1 406 61.3
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 4.4e-135 485.3 402 60.9
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 9.9e-135 484.2 405 61.0
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 2.2e-134 483.0 364 64.8
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 2.4e-133 479.6 404 60.6
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 2.4e-133 479.6 345 69.0
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 6.0e-132 474.9 395 61.3
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 3.0e-131 472.6 367 64.3
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 4.3e-130 468.8 406 60.1
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.2e-129 467.2 401 60.3
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 3.6e-129 465.7 442 57.5
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 3.6e-129 465.7 442 57.5
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 3.1e-128 462.6 403 58.6
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 6.9e-128 461.5 403 60.0
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 3.4e-127 459.1 340 67.4
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 4.4e-127 458.8 402 60.0
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 3.8e-126 455.7 414 56.8
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.6e-124 450.3 410 58.0
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 6.0e-124 448.4 392 57.7
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 2.3e-123 446.4 409 57.2
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.9e-122 443.4 365 61.6
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.3e-122 442.6 395 57.7
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 3.6e-121 439.1 400 57.0
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 1.8e-120 436.8 400 56.5
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 5.8e-119 431.8 403 56.8
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 4.9e-118 428.7 399 57.1
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.1e-117 427.6 318 65.4
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 1.1e-117 427.6 399 56.4
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.4e-117 427.2 386 57.3
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 7.1e-117 424.9 406 56.2
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 7.1e-117 424.9 389 57.8
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.1e-116 423.3 404 55.0
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 6.0e-116 421.8 399 56.4
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 7.9e-116 421.4 394 55.6
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.0e-115 419.5 404 54.7
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 3.9e-115 419.1 404 54.7
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 1.2e-108 397.5 359 56.8
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 3.5e-108 396.0 319 58.9
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 1.8e-107 393.7 368 55.4
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 1.8e-107 393.7 368 55.4
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 1.8e-107 393.7 330 59.7
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 2.3e-107 393.3 401 52.9
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 3.9e-107 392.5 368 55.2
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 5.1e-107 392.1 251 70.9
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 3.3e-106 389.4 402 52.2
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 9.6e-106 387.9 411 54.3
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 2.8e-105 386.3 401 52.6
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 1.2e-103 380.9 395 52.4
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 6.5e-102 375.2 351 55.8
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 2.5e-98 363.2 384 49.2
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.8e-97 359.8 272 65.1
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 4.8e-97 359.0 335 55.5
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.0e-95 353.6 262 65.6
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 4.2e-93 345.9 267 67.8
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 9.3e-93 344.7 281 66.5
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 5.1e-91 339.0 333 54.4
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 2.5e-90 336.7 389 46.0
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.3e-90 335.9 272 60.7
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 2.4e-88 330.1 382 45.5
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.3e-86 324.3 231 66.7
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 6.5e-86 322.0 400 43.2
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.0e-83 314.7 257 59.1
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.3e-81 307.8 267 58.4
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 1.8e-80 303.9 400 41.8
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 9.1e-80 301.6 250 59.2
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 8.0e-76 288.5 360 47.2
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.6e-63 247.7 193 65.3
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 9.4e-61 238.4 156 66.7
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 8.8e-59 231.9 454 35.2
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 2.3e-43 180.6 358 34.6
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 2.2e-41 174.1 451 29.3
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 6.6e-38 162.5 132 65.9
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 5.6e-37 159.5 134 63.4
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 2.1e-36 157.5 139 62.6
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 4.7e-36 156.4 137 64.2
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 5.8e-34 149.4 109 64.2
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 1.3e-30 138.3 223 37.2
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 2.3e-30 137.5 223 37.2
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 6.6e-30 136.0 369 29.5
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 1.6e-28 131.3 333 27.0
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 4.1e-24 116.7 67 83.6
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 7.3e-21 105.9 68 69.1
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 7.3e-21 105.9 92 60.9
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.1e-19 102.1 108 51.9
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.1e-13 82.0 70 60.0
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.6e-12 77.0 75 53.3
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 2.0e-10 71.2 40 77.5
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 7.6e-10 69.3 56 66.1
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 6.4e-09 66.2 128 35.9
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 6.4e-09 66.2 48 70.8


User provided reference genes

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