Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.8e-75 285.8 142 100.0
MELO3C022697.2 Cucumis melo HOM05D005200 ORTHO05D005760 1.0e-65 253.4 143 90.2
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 9.1e-51 203.8 143 76.9
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 4.7e-23 111.7 95 64.2
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 7.5e-13 77.8 91 47.3
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 1.7e-12 76.6 68 61.8
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.8e-11 73.2 101 46.5
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 3.1e-11 72.4 127 43.3
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 3.1e-11 72.4 132 34.8
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 5.4e-11 71.6 118 39.8
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 1.6e-10 70.1 132 35.6
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 2.0e-10 69.7 124 41.9
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 7.8e-10 67.8 125 33.6
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.3e-09 67.0 142 31.7
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 2.3e-09 66.2 121 37.2
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 2.9e-09 65.9 143 35.7
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 2.9e-09 65.9 59 54.2
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 2.9e-09 65.9 124 38.7
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 2.9e-09 65.9 131 35.1
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 3.8e-09 65.5 121 35.5
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 3.8e-09 65.5 106 34.9
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 6.6e-09 64.7 133 37.6
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 8.6e-09 64.3 104 39.4
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 1.1e-08 63.9 119 34.5
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 1.1e-08 63.9 59 54.2
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 1.5e-08 63.5 80 45.0
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.5e-08 63.5 121 38.8
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 2.5e-08 62.8 124 34.7
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 2.5e-08 62.8 58 51.7
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.3e-08 62.4 58 53.4
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 3.3e-08 62.4 79 44.3
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 3.3e-08 62.4 149 32.2
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 4.3e-08 62.0 140 30.7
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 4.3e-08 62.0 58 53.4
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 4.3e-08 62.0 107 40.2
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 5.6e-08 61.6 123 34.1
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 5.6e-08 61.6 119 32.8
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 7.3e-08 61.2 106 40.6
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 7.3e-08 61.2 140 30.7
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 7.3e-08 61.2 121 38.0
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 7.3e-08 61.2 58 48.3
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 7.3e-08 61.2 119 33.6
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 9.5e-08 60.8 97 40.2
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 9.5e-08 60.8 106 42.5
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 9.5e-08 60.8 121 38.0
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 1.2e-07 60.5 75 41.3
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.2e-07 60.5 127 32.3
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.2e-07 60.5 119 32.8
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.2e-07 60.5 119 32.8
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 1.2e-07 60.5 85 45.9
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.6e-07 60.1 135 32.6
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 1.6e-07 60.1 73 38.4
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 1.6e-07 60.1 67 47.8
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 1.6e-07 60.1 99 39.4
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 2.1e-07 59.7 84 44.0
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 2.1e-07 59.7 83 43.4
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 4.7e-07 58.5 63 47.6
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 4.7e-07 58.5 127 34.6
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 4.7e-07 58.5 117 33.3
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 6.1e-07 58.2 73 43.8
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 1.0e-06 57.4 81 39.5
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.4e-06 57.0 58 51.7
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 1.4e-06 57.0 116 33.6
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.4e-06 57.0 75 40.0
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 1.8e-06 56.6 86 39.5
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 2.3e-06 56.2 43 58.1
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.3e-06 56.2 136 32.4
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.3e-06 56.2 43 58.1
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 2.3e-06 56.2 91 38.5
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.3e-06 56.2 91 34.1
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 2.3e-06 56.2 67 46.3
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 3.0e-06 55.8 58 48.3
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 3.0e-06 55.8 123 33.3
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 4.0e-06 55.5 37 62.2
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 4.0e-06 55.5 106 34.9
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 5.2e-06 55.1 127 32.3
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 5.2e-06 55.1 42 57.1
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 5.2e-06 55.1 42 57.1
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 6.8e-06 54.7 90 41.1
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 6.8e-06 54.7 70 45.7
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 6.8e-06 54.7 76 39.5


User provided reference genes

Program Settings