Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 2.9e-154 548.5 279 100.0
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 1.5e-145 519.6 277 95.3
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 4.9e-141 504.6 279 91.0
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 1.0e-106 390.6 278 72.3
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 2.1e-104 382.9 285 69.8
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 4.8e-104 381.7 278 70.5
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 1.8e-103 379.8 280 69.6
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 9.0e-103 377.5 280 68.9
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 4.5e-102 375.2 278 69.4
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 4.5e-102 375.2 280 68.6
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 1.3e-101 373.6 280 68.6
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 1.3e-101 373.6 279 69.2
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 7.9e-99 364.4 281 67.6
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 5.1e-98 361.7 283 66.8
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 5.1e-98 361.7 279 69.2
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 6.7e-98 361.3 279 67.4
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 8.7e-98 360.9 285 67.7
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 1.9e-97 359.8 281 66.9
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 2.5e-97 359.4 286 65.0
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 3.3e-97 359.0 283 67.8
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 4.3e-97 358.6 281 65.5
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 6.2e-96 354.8 279 68.1
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 6.5e-93 344.7 283 66.1
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 1.9e-92 343.2 285 67.0
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 4.2e-92 342.0 270 66.7
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 9.3e-92 340.9 245 71.0
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 1.2e-91 340.5 279 64.5
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 1.2e-91 340.5 243 74.1
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 2.1e-91 339.7 249 71.1
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 4.6e-91 338.6 249 70.3
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 1.0e-90 337.4 262 68.3
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 1.8e-90 336.7 250 69.6
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 1.8e-90 336.7 245 69.8
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 1.8e-90 336.7 249 70.3
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 2.3e-90 336.3 250 69.2
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 6.7e-90 334.7 193 85.5
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 1.9e-89 333.2 243 70.8
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 4.3e-89 332.0 250 69.6
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 5.7e-89 331.6 274 64.6
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 2.1e-88 329.7 261 68.6
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 3.7e-88 328.9 246 69.1
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 6.3e-88 328.2 239 72.4
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 1.4e-87 327.0 244 68.4
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 2.4e-87 326.2 277 65.7
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 3.1e-87 325.9 238 69.7
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 9.0e-87 324.3 221 76.0
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 1.2e-86 323.9 242 69.4
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 2.6e-86 322.8 242 68.6
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 7.6e-86 321.2 222 73.0
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 7.6e-86 321.2 245 68.2
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 7.6e-86 321.2 245 68.2
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 1.3e-85 320.5 226 70.8
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 1.3e-85 320.5 235 69.8
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 1.7e-85 320.1 228 71.1
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 2.2e-85 319.7 279 62.7
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 3.8e-85 318.9 252 68.7
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 3.8e-85 318.9 279 63.4
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 3.8e-85 318.9 229 71.6
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 5.0e-85 318.5 242 67.8
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 1.1e-84 317.4 252 66.7
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 4.2e-84 315.5 229 70.7
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 9.3e-84 314.3 233 69.5
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 9.3e-84 314.3 222 72.5
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 1.8e-82 310.1 242 68.2
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 5.1e-82 308.5 252 65.9
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 8.7e-82 307.8 371 49.6
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 1.3e-80 303.9 299 57.2
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 4.8e-80 302.0 208 72.6
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 6.3e-80 301.6 245 65.3
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 6.3e-80 301.6 275 59.3
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 1.8e-79 300.1 232 68.1
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 6.9e-79 298.1 240 64.2
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 2.0e-78 296.6 246 64.2
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 2.6e-78 296.2 218 67.4
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 2.9e-77 292.7 229 69.4
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 2.5e-76 289.7 220 69.5
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 9.4e-76 287.7 276 58.7
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 6.7e-74 281.6 242 63.2
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 1.7e-72 276.9 184 76.1
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 2.2e-72 276.6 248 60.1
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 7.2e-68 261.5 202 64.9
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 2.6e-65 253.1 212 63.7
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 7.4e-65 251.5 268 53.7
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 3.1e-63 246.1 249 55.4
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 3.8e-61 239.2 259 51.7
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 6.5e-61 238.4 186 66.1
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 8.5e-61 238.0 186 68.8
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 4.2e-60 235.7 243 53.5
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 2.7e-59 233.0 417 39.6
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 2.7e-59 233.0 231 56.7
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 3.0e-58 229.6 190 64.2
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 8.2e-56 221.5 151 74.8
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 1.8e-55 220.3 145 78.6
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 7.7e-54 214.9 202 52.0
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.5e-52 210.7 200 58.5
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 1.6e-51 207.2 164 63.4
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 1.3e-48 197.6 169 59.8
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 3.2e-44 183.0 150 64.0
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 1.2e-35 154.5 182 50.5
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 2.3e-29 133.7 144 43.8
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 6.6e-29 132.1 86 74.4
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 1.8e-26 124.0 265 33.6
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 5.2e-26 122.5 235 34.9
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 4.1e-23 112.8 86 66.3
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 2.3e-18 97.1 61 75.4
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.2e-11 74.7 37 91.9
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.2e-11 74.7 37 91.9
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 6.2e-11 72.4 37 89.2
FAN09G2218 Fragaria x ananassa HOM05D007122 ORTHO05D008918 2.4e-10 70.5 90 44.4
CBR_g49209 Chara braunii HOM05D002234 ORTHO05D002254 1.3e-08 64.7 231 28.1
QL05p084699 Quercus lobata HOM05D007122 ORTHO05D008918 6.4e-08 62.4 49 59.2
AagrBONN_evm.TU.Sc2ySwM_369.590 Anthoceros agrestis HOM05D002234 ORTHO05D002254 1.9e-07 60.8 232 29.3
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 2.4e-07 60.5 110 37.3
PRCOL_00002778 Prasinoderma coloniale HOM05D007122 ORTHO05D008918 3.2e-07 60.1 225 30.2
Mapoly0070s0031 Marchantia polymorpha HOM05D002234 ORTHO05D002254 4.1e-07 59.7 231 29.0
MSTRG.14623 Avicennia marina HOM05D002234 ORTHO05D002254 7.1e-07 58.9 231 26.4
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 7.1e-07 58.9 234 26.5
Pp3c15_4460 Physcomitrium patens HOM05D002234 ORTHO05D002254 9.2e-07 58.5 231 26.4
THA.LOC104812983 Tarenaya hassleriana HOM05D002234 ORTHO05D002254 1.2e-06 58.2 231 26.8
CDE04G1021 Ceratophyllum demersum HOM05D002234 ORTHO05D002254 1.6e-06 57.8 158 32.9
CANSAT56G3737 Cannabis sativa HOM05D002234 ORTHO05D002254 2.1e-06 57.4 230 26.1
Peaxi162Scf00392g00732 Petunia axillaris HOM05D006432 ORTHO05D008257 2.7e-06 57.0 202 26.7
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 3.5e-06 56.6 220 31.8
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 3.5e-06 56.6 220 31.8
Cc03_g05780 Coffea canephora HOM05D006432 ORTHO05D008257 3.5e-06 56.6 280 26.1
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 4.6e-06 56.2 220 31.8
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 6.0e-06 55.8 167 33.5
MSTRG.13126 Avicennia marina HOM05D002234 ORTHO05D002254 7.8e-06 55.5 231 24.7
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 7.8e-06 55.5 170 33.5
Cfa000140 Carpinus fangiana HOM05D002234 ORTHO05D002254 7.8e-06 55.5 220 26.8
CDE07G0233 Ceratophyllum demersum HOM05D002234 ORTHO05D002254 7.8e-06 55.5 158 32.3


User provided reference genes

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