Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 6.7e-293 1010.0 527 100.0
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 2.6e-244 848.6 479 93.3
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 7.8e-233 810.4 479 88.3
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 7.4e-199 697.6 510 74.5
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 9.6e-130 468.0 510 53.7
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 3.6e-129 466.1 512 53.9
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.4e-125 453.4 488 53.9
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 9.3e-125 451.4 495 54.3
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.2e-124 451.1 488 53.3
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 1.6e-124 450.7 491 53.4
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 7.8e-124 448.4 488 53.1
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 1.0e-123 448.0 487 53.8
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 2.3e-123 446.8 504 53.8
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 3.0e-123 446.4 509 52.8
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 3.9e-123 446.0 491 53.8
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 3.9e-123 446.0 487 54.0
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 2.1e-121 440.3 503 50.1
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.1e-120 438.0 500 51.8
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.1e-120 436.4 511 52.6
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 9.9e-119 431.4 506 50.6
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 9.9e-119 431.4 487 51.5
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.3e-118 431.0 512 52.5
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 1.3e-118 431.0 483 53.6
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 1.7e-118 430.6 491 51.7
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 1.7e-118 430.6 500 50.8
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.2e-117 426.0 540 49.6
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.7e-116 423.3 484 52.3
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.3e-115 421.0 489 54.0
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.7e-115 420.6 503 50.1
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 3.9e-115 419.5 524 49.4
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 6.6e-115 418.7 489 49.9
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-114 417.9 484 51.9
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.5e-114 417.5 540 49.1
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 2.5e-114 416.8 484 51.7
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.3e-114 416.4 484 51.9
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 9.6e-114 414.8 504 49.6
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 9.6e-114 414.8 497 49.5
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.1e-113 413.7 494 50.2
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 8.1e-113 411.8 509 49.5
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 2.4e-112 410.2 508 50.8
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 3.1e-112 409.8 498 50.0
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 5.3e-112 409.1 502 50.4
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 4.5e-111 406.0 503 50.7
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 4.5e-111 406.0 489 48.9
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 7.6e-111 405.2 491 49.9
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 9.9e-111 404.8 493 50.5
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 2.2e-110 403.7 498 49.4
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 4.9e-110 402.5 485 50.5
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 8.4e-110 401.7 503 50.3
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.4e-109 400.2 486 50.2
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 3.2e-109 399.8 493 49.3
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.6e-108 397.5 501 49.5
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 2.3e-107 393.7 497 47.5
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.9e-107 392.9 408 52.2
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.9e-107 392.9 408 52.2
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 3.9e-107 392.9 511 46.6
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 8.7e-107 391.7 487 49.3
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.1e-106 391.3 487 50.3
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.1e-106 391.3 487 50.3
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.9e-106 390.6 490 49.4
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.9e-106 390.6 490 47.3
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.9e-106 390.6 486 47.5
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 9.6e-106 388.3 548 45.6
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 9.6e-106 388.3 526 46.8
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 9.6e-106 388.3 526 46.8
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.6e-105 387.5 489 49.5
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 1.6e-105 387.5 415 52.8
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.8e-105 386.7 493 48.9
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 2.8e-105 386.7 520 47.5
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 4.8e-105 386.0 485 49.5
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.1e-104 384.8 491 48.3
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.4e-104 383.6 503 47.3
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.4e-104 383.6 489 48.7
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 3.1e-104 383.3 456 50.0
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 5.3e-104 382.5 494 47.0
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 9.0e-104 381.7 499 46.1
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 3.4e-103 379.8 481 49.5
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 5.8e-103 379.0 484 47.5
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.7e-102 377.5 507 47.7
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 2.9e-102 376.7 488 46.5
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.6e-100 370.9 486 47.3
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 3.5e-100 369.8 410 52.4
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.5e-98 364.4 493 47.5
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 5.7e-98 362.5 468 47.6
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 9.6e-98 361.7 377 54.9
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.3e-97 361.3 490 46.3
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 3.7e-97 359.8 531 43.9
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 5.3e-96 355.9 394 52.3
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 2.6e-95 353.6 505 45.9
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.3e-94 351.3 502 44.6
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 1.3e-94 351.3 489 45.0
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 2.2e-94 350.5 484 46.7
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 2.9e-94 350.1 530 42.6
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 1.9e-93 347.4 489 46.0
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 2.7e-92 343.6 344 56.1
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.8e-91 340.9 457 45.7
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 2.5e-90 337.0 484 44.8
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 4.1e-88 329.7 480 45.0
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.2e-86 323.9 484 44.2
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 2.5e-82 310.5 465 46.2
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 4.3e-82 309.7 481 42.2
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 9.7e-82 308.5 494 43.3
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.7e-81 307.8 478 42.1
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 2.0e-79 300.8 481 40.1
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.8e-78 296.6 480 40.8
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 3.2e-77 293.5 562 38.8
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.2e-76 291.6 455 42.4
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 5.3e-72 276.2 421 43.9
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.2e-71 275.0 484 37.6
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 5.9e-71 272.7 479 38.0
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 7.7e-71 272.3 380 42.1
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.9e-69 267.7 339 48.4
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 6.1e-68 262.7 409 41.6
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 4.0e-67 260.0 492 39.0
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.4e-64 251.5 489 38.4
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 5.9e-63 246.1 479 37.6
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 8.8e-59 232.3 374 40.4
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 5.4e-56 223.0 453 37.3
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 2.7e-55 220.7 419 37.2
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 2.5e-53 214.2 500 34.0
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 3.0e-51 207.2 741 28.1
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 7.5e-50 202.6 498 34.1
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 8.3e-41 172.6 218 48.2
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.2e-40 170.6 219 48.9
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.2e-39 168.7 220 47.7
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.0e-39 167.9 676 27.5
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.3e-38 165.2 393 32.6
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 9.5e-37 159.1 394 32.7
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.6e-36 158.3 217 42.4
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.7e-36 156.8 450 33.1
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 1.2e-28 132.1 217 43.3
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 3.6e-28 130.6 132 55.3
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 2.6e-26 124.4 576 23.4
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 5.8e-26 123.2 623 24.4
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.3e-25 122.1 218 41.3
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 1.5e-21 108.6 213 34.7
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 4.3e-21 107.1 107 49.5
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.6e-20 104.0 220 32.7
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.8e-19 101.7 214 33.6
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 2.6e-18 97.8 494 24.7
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 4.4e-18 97.1 142 37.3
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.8e-18 96.7 212 35.8
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.1e-16 92.4 167 36.5
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 3.2e-16 90.9 238 32.8
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.1e-16 90.5 161 36.6
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.1e-16 90.5 222 28.8
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 4.6e-15 87.0 107 42.1
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 5.1e-14 83.6 572 22.7
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.1e-13 82.4 163 39.9
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.5e-13 82.0 235 31.1
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 2.5e-13 81.3 183 36.6
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 9.6e-13 79.3 301 25.9
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 6.4e-09 66.6 47 61.7
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 4.2e-08 63.9 124 42.7
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.2e-07 62.4 93 41.9
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 1.6e-07 62.0 126 42.9
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 7.8e-07 59.7 77 41.6
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 2.3e-06 58.2 96 32.3
FAN11G0972 Fragaria x ananassa HOM05D004572 ORTHO05D005425 8.7e-06 56.2 185 29.7


User provided reference genes

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