Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 5.1e-67 257.7 136 100.0
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 3.3e-58 228.4 134 89.6
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 9.0e-56 220.3 124 93.5
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 2.4e-53 212.2 120 91.7
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 7.8e-52 207.2 135 83.7
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 8.4e-46 187.2 127 80.3
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 5.8e-31 137.9 130 57.7
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 5.8e-31 137.9 123 58.5
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 7.1e-29 131.0 123 56.9
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 1.2e-28 130.2 119 54.6
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 1.6e-28 129.8 145 51.0
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 3.5e-28 128.6 122 58.2
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 3.5e-28 128.6 127 52.8
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 3.5e-28 128.6 127 58.3
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 7.9e-28 127.5 123 56.1
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 1.3e-27 126.7 127 57.5
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 3.9e-27 125.2 134 50.0
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 5.1e-27 124.8 126 50.8
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 1.5e-26 123.2 128 49.2
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 1.9e-26 122.9 117 53.8
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 1.9e-26 122.9 126 54.0
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 7.4e-26 120.9 118 54.2
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 2.8e-25 119.0 129 52.7
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 6.3e-25 117.9 128 47.7
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 8.2e-25 117.5 115 55.7
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 1.8e-24 116.3 130 52.3
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 1.8e-24 116.3 129 46.5
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 4.1e-24 115.2 136 46.3
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 4.1e-24 115.2 134 47.0
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 4.1e-24 115.2 129 51.2
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 4.1e-24 115.2 119 53.8
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 5.3e-24 114.8 129 49.6
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.5e-23 113.2 126 46.8
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 2.0e-23 112.8 121 47.9
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 2.0e-23 112.8 117 53.0
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 2.6e-23 112.5 125 50.4
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 4.5e-23 111.7 119 50.4
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 7.6e-23 110.9 128 48.4
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.0e-22 110.5 123 51.2
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.3e-22 110.2 128 48.4
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.3e-22 110.2 126 50.0
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 1.3e-22 110.2 131 48.9
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 2.2e-22 109.4 136 44.9
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 2.2e-22 109.4 126 50.0
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 2.2e-22 109.4 126 50.0
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 2.2e-22 109.4 124 50.8
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 3.8e-22 108.6 134 47.0
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 6.5e-22 107.8 137 48.2
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 1.1e-21 107.1 127 48.0
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 1.4e-21 106.7 118 50.8
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 1.4e-21 106.7 124 48.4
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 1.4e-21 106.7 139 45.3
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 2.5e-21 105.9 123 48.8
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 2.5e-21 105.9 104 52.9
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 3.2e-21 105.5 90 57.8
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 4.2e-21 105.1 117 50.4
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 1.6e-20 103.2 120 47.5
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 2.7e-20 102.4 122 46.7
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 3.6e-20 102.1 108 49.1
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 4.6e-20 101.7 114 48.2
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 6.1e-20 101.3 90 58.9
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 7.9e-20 100.9 113 47.8
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 7.9e-20 100.9 134 46.3
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 7.9e-20 100.9 121 46.3
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 1.4e-19 100.1 111 55.9
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 1.8e-19 99.8 125 44.8
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 1.8e-19 99.8 150 42.0
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 2.3e-19 99.4 122 44.3
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 3.0e-19 99.0 110 50.0
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 6.7e-19 97.8 122 45.1
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 6.7e-19 97.8 113 45.1
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 1.1e-18 97.1 128 43.0
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 1.5e-18 96.7 127 41.7
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 1.9e-18 96.3 121 46.3
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 1.9e-18 96.3 121 47.1
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 4.3e-18 95.1 121 46.3
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 9.7e-18 94.0 111 54.1
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 1.3e-17 93.6 119 45.4
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 1.3e-17 93.6 119 46.2
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 2.2e-17 92.8 116 40.5
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 6.3e-17 91.3 107 48.6
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 6.3e-17 91.3 117 43.6
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 8.2e-17 90.9 121 46.3
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 8.2e-17 90.9 88 61.4
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 1.8e-16 89.7 104 48.1
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 3.1e-16 89.0 104 46.2
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 3.1e-16 89.0 136 38.2
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 5.3e-16 88.2 93 49.5
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 5.3e-16 88.2 113 44.2
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 6.9e-16 87.8 114 45.6
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 3.4e-15 85.5 146 38.4
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 4.5e-15 85.1 127 40.9
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 1.7e-14 83.2 108 46.3
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 2.2e-14 82.8 117 41.0
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 1.9e-13 79.7 135 39.3
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 4.2e-13 78.6 68 58.8
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 1.6e-12 76.6 112 38.4
C02p14430 Brassica napus HOM05D007217 ORTHO05D009092 2.7e-12 75.9 62 58.1
BolC2t07567H Brassica oleracea HOM05D007217 ORTHO05D009092 2.7e-12 75.9 62 58.1
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 3.6e-12 75.5 130 38.5
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 5.1e-11 71.6 88 45.5
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 5.1e-11 71.6 88 45.5
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 6.7e-11 71.2 58 56.9
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 6.3e-09 64.7 113 35.4
ATR0763G267 Amborella trichopoda HOM05D007217 ORTHO05D009092 9.1e-08 60.8 69 47.8
CDE03G0339 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 1.5e-07 60.1 78 42.3
CDE03G0351 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 1.5e-07 60.1 66 45.5
Zm00001eb228930 Zea mays HOM05D007217 ORTHO05D009092 3.4e-07 58.9 63 50.8


User provided reference genes

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