Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G030050 Cucumis sativus L. HOM05D008218 ORTHO05D010347 5.3e-105 384.4 200 100.0
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 2.1e-45 186.4 119 83.2
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 7.0e-25 118.2 158 51.9
Hma1.2p1_0149F.1_g066410 Hydrangea macrophylla HOM05D008218 ORTHO05D010347 4.7e-13 79.0 48 83.3
Phvul.008G131550 Phaseolus vulgaris HOM05D008218 ORTHO05D010347 2.4e-12 76.6 48 79.2
TWI36G0894 Tripterygium wilfordii HOM05D008218 ORTHO05D010347 4.0e-12 75.9 48 81.2
RcHm_v2.0_Chr6g0284071 Rosa chinensis HOM05D008218 ORTHO05D010347 8.9e-12 74.7 48 79.2
Gohir.A07G161100 Gossypium hirsutum HOM05D008218 ORTHO05D010347 3.4e-11 72.8 48 77.1
Gohir.D07G164600 Gossypium hirsutum HOM05D008218 ORTHO05D010347 3.4e-11 72.8 48 77.1
Potri.002G246300 Populus trichocarpa HOM05D008218 ORTHO05D010347 3.4e-11 72.8 48 77.1
Prupe.8G198600 Prunus persica HOM05D008218 ORTHO05D010347 3.4e-11 72.8 48 77.1
COL.COLO4_08652 Corchorus olitorius HOM05D008218 ORTHO05D010347 9.9e-11 71.2 48 77.1
Lalb_Chr19g0125871 Lupinus albus HOM05D008218 ORTHO05D010347 9.9e-11 71.2 48 77.1
Solyc06g063400.3 Solanum lycopersicum HOM05D008218 ORTHO05D010347 1.3e-10 70.9 48 70.8
Solyc06g063390.3 Solanum lycopersicum HOM05D008218 ORTHO05D010347 1.7e-10 70.5 48 70.8
TWI18G1398 Tripterygium wilfordii HOM05D008218 ORTHO05D010347 1.7e-10 70.5 48 77.1
FAN27G2427 Fragaria x ananassa HOM05D008218 ORTHO05D010347 2.2e-10 70.1 44 81.8
PGSC0003DMG400007753 Solanum tuberosum HOM05D008218 ORTHO05D010347 2.2e-10 70.1 45 82.2
Lsat_1_v5_gn_2_120021 Lactuca sativa HOM05D009582 ORTHO05D010347 3.8e-10 69.3 48 77.1
FAN15G3347 Fragaria x ananassa HOM05D008218 ORTHO05D010347 4.9e-10 68.9 44 79.5
Gohir.D11G145833 Gossypium hirsutum HOM05D008218 ORTHO05D010347 6.4e-10 68.6 48 72.9
Thecc.01G219400 Theobroma cacao HOM05D008218 ORTHO05D010347 6.4e-10 68.6 48 72.9
CiPaw.13G048900 Carya illinoinensis HOM05D008218 ORTHO05D010347 8.4e-10 68.2 48 70.8
Nn7g36571 Nelumbo nucifera HOM05D008218 ORTHO05D010347 1.1e-09 67.8 48 72.9
Manes.12G047600 Manihot esculenta HOM05D008218 ORTHO05D010347 1.9e-09 67.0 48 70.8
Mapoly0087s0005 Marchantia polymorpha HOM05D008218 ORTHO05D010347 2.4e-09 66.6 48 70.8
TWI75G0809 Tripterygium wilfordii HOM05D008218 ORTHO05D010347 2.4e-09 66.6 48 72.9
Duzib211G0660 Durio zibethinus HOM05D008218 ORTHO05D010347 3.2e-09 66.2 48 70.8
Hma1.2p1_0226F.1_g095360 Hydrangea macrophylla HOM05D008218 ORTHO05D010347 7.1e-09 65.1 48 70.8
Nitab4.5_0013864g0040 Nicotiana tabacum HOM05D008218 ORTHO05D010347 7.1e-09 65.1 49 67.3
Os12g0405700 Oryza sativa ssp. japonica HOM05D008218 ORTHO05D010347 7.1e-09 65.1 48 66.7
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 1.6e-08 63.9 266 26.7
EL10Ac7g17908 Beta vulgaris HOM05D008218 ORTHO05D010347 2.7e-08 63.2 50 68.0
FAN24G2161 Fragaria x ananassa HOM05D008218 ORTHO05D010347 3.5e-08 62.8 67 55.2
Gohir.A07G093000 Gossypium hirsutum HOM05D008218 ORTHO05D010347 3.5e-08 62.8 48 68.8
PSO017G0111 Papaver somniferum HOM05D008218 ORTHO05D010347 3.5e-08 62.8 48 70.8
PSO170G1121 Papaver somniferum HOM05D008218 ORTHO05D010347 3.5e-08 62.8 48 70.8
PSO170G3918 Papaver somniferum HOM05D008218 ORTHO05D010347 3.5e-08 62.8 48 70.8
Potri.014G191300 Populus trichocarpa HOM05D008218 ORTHO05D010347 3.5e-08 62.8 48 66.7
CiPaw.14G038700 Carya illinoinensis HOM05D008218 ORTHO05D010347 4.6e-08 62.4 48 66.7
THA.LOC104818972 Tarenaya hassleriana HOM05D008218 ORTHO05D010347 6.0e-08 62.0 48 68.8
THA.LOC104822489 Tarenaya hassleriana HOM05D008218 ORTHO05D010347 6.0e-08 62.0 48 68.8
Thecc.05G251000 Theobroma cacao HOM05D008218 ORTHO05D010347 6.0e-08 62.0 47 72.3
CAN.G874.7 Capsicum annuum HOM05D008218 ORTHO05D010347 7.8e-08 61.6 48 68.8
Solyc06g083340.3 Solanum lycopersicum HOM05D008218 ORTHO05D010347 7.8e-08 61.6 48 68.8
PGSC0003DMG400020101 Solanum tuberosum HOM05D008218 ORTHO05D010347 7.8e-08 61.6 48 68.8
Duzib133G0946 Durio zibethinus HOM05D008218 ORTHO05D010347 1.3e-07 60.8 48 66.7
Manes.13G049700 Manihot esculenta HOM05D008218 ORTHO05D010347 1.3e-07 60.8 48 66.7
PSO357G0222 Papaver somniferum HOM05D008218 ORTHO05D010347 1.3e-07 60.8 48 68.8
Gohir.A11G139700 Gossypium hirsutum HOM05D008218 ORTHO05D010347 2.3e-07 60.1 48 68.8
Hund18437 Selenicereus undatus HOM05D008218 ORTHO05D010347 3.0e-07 59.7 48 66.7
Migut.D02504 Erythranthe guttata HOM05D008218 ORTHO05D010347 5.1e-07 58.9 48 64.6
Thhalv10021897m.g Eutrema salsugineum HOM05D008218 ORTHO05D010347 6.6e-07 58.5 48 64.6
AL3G18510 Arabidopsis lyrata HOM05D008218 ORTHO05D010347 8.7e-07 58.2 48 64.6
AT3G07230 Arabidopsis thaliana HOM05D008218 ORTHO05D010347 8.7e-07 58.2 48 64.6
Carub.0003s0676 Capsella rubella HOM05D008218 ORTHO05D010347 1.1e-06 57.8 48 64.6
Pp3c20_8300 Physcomitrium patens HOM05D008218 ORTHO05D010347 1.1e-06 57.8 50 66.0
PGR044G2382 Punica granatum HOM05D008218 ORTHO05D010347 1.9e-06 57.0 48 62.5
CARHR081880 Cardamine hirsuta HOM05D008218 ORTHO05D010347 2.5e-06 56.6 48 62.5
MELO3C029169.2 Cucumis melo HOM05D008218 ORTHO05D010347 4.3e-06 55.8 44 68.2
Glyma.18G159800 Glycine max HOM05D008218 ORTHO05D010347 4.3e-06 55.8 48 60.4
Aa31LG5G17820 Aethionema arabicum HOM05D008218 ORTHO05D010347 7.3e-06 55.1 48 62.5
Nitab4.5_0003020g0060 Nicotiana tabacum HOM05D008218 ORTHO05D010347 7.3e-06 55.1 32 84.4


User provided reference genes

Program Settings