Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 4.9e-191 671.0 349 100.0
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.7e-122 443.4 272 85.7
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 1.7e-114 416.8 277 79.4
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 8.1e-101 371.3 268 73.9
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 6.0e-88 328.6 180 95.6
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 8.7e-55 218.4 289 46.4
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 2.5e-54 216.9 280 50.4
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 5.7e-54 215.7 290 46.6
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 7.4e-54 215.3 290 47.9
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 4.8e-53 212.6 289 46.7
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 1.8e-52 210.7 289 47.8
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 5.3e-52 209.1 290 47.6
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 4.5e-51 206.1 288 45.1
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 1.0e-50 204.9 288 47.2
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 2.9e-50 203.4 287 47.0
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 7.2e-49 198.7 286 47.2
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 1.2e-48 198.0 289 45.3
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 1.5e-46 191.0 288 45.5
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 4.3e-46 189.5 263 47.5
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 2.8e-45 186.8 285 44.6
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 8.2e-45 185.3 286 45.1
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 1.2e-43 181.4 304 42.8
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.2e-43 181.4 284 44.7
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.0e-43 180.6 284 44.7
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 5.9e-43 179.1 289 45.0
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 5.9e-43 179.1 293 46.4
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 7.7e-43 178.7 298 43.0
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.0e-42 178.3 289 40.1
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 1.3e-42 177.9 288 41.0
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 5.0e-42 176.0 285 43.5
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 3.6e-40 169.9 300 42.0
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 3.6e-40 169.9 184 57.1
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 7.9e-40 168.7 282 42.9
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 5.1e-39 166.0 278 42.4
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 8.8e-39 165.2 342 38.6
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 1.5e-38 164.5 298 39.6
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 2.6e-38 163.7 282 42.2
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 3.3e-38 163.3 312 40.4
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 3.3e-38 163.3 290 41.7
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 3.3e-38 163.3 280 40.4
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 4.4e-38 162.9 292 40.8
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 6.3e-37 159.1 243 44.4
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 3.1e-36 156.8 229 46.3
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 5.3e-36 156.0 187 55.1
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 9.1e-36 155.2 281 39.1
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.2e-35 154.8 286 42.7
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 1.5e-35 154.5 292 43.2
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 1.5e-35 154.5 292 43.2
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 2.6e-35 153.7 295 41.7
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.9e-33 147.5 303 38.9
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 2.5e-33 147.1 300 39.7
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 7.2e-33 145.6 302 36.1
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 9.4e-33 145.2 181 52.5
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 9.4e-33 145.2 178 53.4
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.6e-32 144.4 298 39.3
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 1.6e-32 144.4 177 51.4
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 2.1e-32 144.1 281 40.2
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 2.7e-32 143.7 181 51.9
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.4e-31 141.4 315 35.6
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 3.0e-31 140.2 282 39.7
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 1.5e-30 137.9 174 50.0
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 2.0e-30 137.5 278 40.6
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.6e-30 137.1 296 37.8
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 4.4e-30 136.3 288 39.2
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 9.7e-30 135.2 272 39.3
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 3.1e-28 130.2 176 48.9
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 7.0e-28 129.0 294 36.7
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 1.6e-27 127.9 205 42.9
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 2.0e-27 127.5 184 44.6
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 3.5e-27 126.7 282 35.8
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 4.5e-27 126.3 176 46.6
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 1.3e-26 124.8 191 47.6
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 5.0e-26 122.9 309 34.6
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 1.5e-25 121.3 180 47.8
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 7.2e-25 119.0 290 34.8
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 7.2e-25 119.0 170 47.1
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 1.2e-24 118.2 247 37.7
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.6e-24 117.9 186 44.6
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 6.7e-23 112.5 180 45.6
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 1.8e-20 104.4 188 39.9
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 2.4e-20 104.0 278 34.2
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 4.1e-20 103.2 176 41.5
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 2.7e-19 100.5 314 31.5
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 5.9e-19 99.4 198 40.4
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 2.2e-18 97.4 286 30.1
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 2.9e-18 97.1 218 38.1
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 3.8e-18 96.7 107 47.7
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 5.0e-18 96.3 257 33.1
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 5.0e-18 96.3 301 30.9
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 5.0e-18 96.3 300 30.3
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 1.9e-17 94.4 282 31.6
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 1.9e-17 94.4 282 31.6
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 2.5e-17 94.0 293 32.8
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 4.2e-17 93.2 277 32.5
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 4.2e-17 93.2 194 39.2
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 7.2e-17 92.4 115 54.8
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 1.8e-15 87.8 280 29.3
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 4.0e-15 86.7 278 28.4
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 5.2e-15 86.3 167 40.1
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 5.2e-15 86.3 182 37.4
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 6.8e-15 85.9 133 43.6
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 3.4e-14 83.6 155 42.6
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 5.7e-14 82.8 276 30.4
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 7.5e-14 82.4 292 31.8
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 9.8e-14 82.0 217 32.3
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 1.1e-12 78.6 67 62.7
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 3.1e-12 77.0 196 33.7
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 3.1e-12 77.0 240 32.5
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 4.1e-12 76.6 153 38.6
THA.LOC104804603 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 2.7e-11 73.9 282 28.4
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.0e-10 72.0 191 36.6
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 2.5e-09 67.4 158 36.1
CARHR101080 Cardamine hirsuta HOM05D011699 ORTHO05D008062 3.0e-07 60.5 278 25.9
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 3.0e-07 60.5 70 47.1
EL10Ac7g17790 Beta vulgaris HOM05D000347 ORTHO05D008062 8.9e-07 58.9 242 29.3


User provided reference genes

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