Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 0.0e+00 1448.0 742 100.0
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 0.0e+00 1381.3 743 95.6
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 0.0e+00 1306.2 742 90.8
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 0.0e+00 1180.2 747 83.9
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 2.6e-226 789.3 761 58.6
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 1.3e-225 786.9 809 56.1
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 3.5e-218 762.3 773 57.1
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 1.3e-217 760.4 755 58.3
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 2.7e-215 752.7 765 56.9
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 2.8e-212 742.7 734 57.6
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 4.5e-210 735.3 767 56.1
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 4.5e-210 735.3 759 56.5
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 3.8e-209 732.3 770 56.4
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 8.5e-209 731.1 772 56.0
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 2.5e-208 729.6 767 55.8
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 2.7e-207 726.1 761 54.9
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 5.7e-205 718.4 787 54.9
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 3.7e-204 715.7 777 54.8
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 6.3e-204 714.9 817 53.1
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 5.3e-203 711.8 778 55.0
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.6e-202 710.3 806 53.5
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 2.7e-202 709.5 773 54.1
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 3.5e-202 709.1 777 55.1
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 4.5e-202 708.8 773 54.1
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 7.7e-202 708.0 762 54.5
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 3.8e-201 705.7 764 54.6
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 5.0e-201 705.3 780 54.0
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 1.6e-199 700.3 599 62.9
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 4.0e-198 695.7 759 53.0
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 2.6e-197 693.0 762 53.1
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 7.5e-197 691.4 733 54.6
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 1.4e-195 687.2 761 53.0
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 5.4e-195 685.3 755 54.8
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 2.7e-194 682.9 666 56.6
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 2.3e-193 679.9 784 52.8
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 5.0e-193 678.7 722 55.4
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 4.0e-190 669.1 772 51.9
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 4.0e-190 669.1 735 53.5
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 8.9e-190 667.9 803 51.3
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 1.5e-189 667.2 761 52.4
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 4.4e-189 665.6 765 51.6
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 6.3e-188 661.8 644 55.7
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 7.0e-187 658.3 760 52.4
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 9.2e-187 657.9 768 52.0
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 9.2e-187 657.9 579 60.4
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 8.6e-185 651.4 607 59.0
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 1.9e-184 650.2 766 53.5
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 1.0e-182 644.4 697 54.5
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.0e-182 644.4 707 53.2
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 9.8e-181 637.9 775 49.5
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 3.7e-180 636.0 746 51.9
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 8.3e-180 634.8 754 51.1
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 8.3e-180 634.8 778 49.9
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 7.0e-179 631.7 759 50.9
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 6.0e-178 628.6 757 50.7
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 6.0e-178 628.6 816 49.3
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 7.8e-178 628.2 744 50.3
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 4.7e-175 619.0 780 48.5
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 8.0e-175 618.2 788 50.3
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 1.1e-174 617.8 656 55.2
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.8e-174 617.1 773 49.5
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 1.5e-173 614.0 760 49.6
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 4.4e-173 612.5 764 51.7
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 6.4e-172 608.6 783 49.2
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 4.1e-171 605.9 745 50.1
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 4.1e-171 605.9 781 49.4
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 2.7e-170 603.2 780 49.2
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 1.5e-168 597.4 775 48.6
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 3.3e-168 596.3 649 53.8
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 5.6e-168 595.5 792 48.1
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 9.5e-168 594.7 779 47.6
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 2.1e-167 593.6 720 49.3
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 2.8e-167 593.2 786 48.1
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 3.6e-167 592.8 788 48.5
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 5.2e-166 589.0 767 48.1
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 7.5e-165 585.1 656 51.4
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 1.9e-163 580.5 786 47.5
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 2.4e-163 580.1 670 51.3
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 9.2e-163 578.2 625 52.6
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 1.2e-162 577.8 781 47.6
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 2.7e-162 576.6 783 46.4
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 1.3e-161 574.3 786 47.3
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 5.1e-161 572.4 786 46.6
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 1.9e-160 570.5 782 47.2
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.2e-159 567.8 659 51.1
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 3.6e-159 566.2 779 47.4
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 8.1e-159 565.1 744 46.8
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 4.0e-158 562.8 472 61.7
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 9.2e-155 551.6 825 45.2
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 8.7e-153 545.0 775 46.2
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 2.4e-147 526.9 783 46.4
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 4.2e-139 499.6 410 62.4
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 4.3e-136 489.6 506 53.8
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 6.0e-130 469.2 496 54.4
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 4.5e-125 453.0 603 45.6
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 9.3e-123 445.3 677 42.7
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 3.3e-112 410.2 554 48.0
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 1.5e-109 401.4 713 41.7
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 3.8e-108 396.7 807 37.3
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 1.1e-107 395.2 715 37.6
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 2.2e-103 380.9 584 43.5
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 2.0e-101 374.4 748 36.5
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 3.0e-89 334.0 489 43.8
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 2.2e-87 327.8 487 43.7
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 9.5e-75 285.8 802 30.8
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 1.1e-67 262.3 650 32.9
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 9.8e-64 249.2 273 53.1
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-55 222.2 415 38.8
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 3.9e-52 210.7 317 43.2
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 8.1e-50 203.0 225 55.6
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.1e-43 182.6 232 45.7
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 6.6e-36 156.8 199 45.2
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 1.1e-33 149.4 247 47.0
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 1.9e-30 138.7 559 24.9
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 1.9e-30 138.7 150 55.3
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 1.1e-27 129.4 207 49.3
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.1e-26 125.2 628 22.6
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 2.9e-23 114.8 118 47.5
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 8.4e-23 113.2 146 49.3
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 3.9e-20 104.4 99 64.6
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 1.5e-19 102.4 94 54.3
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 4.9e-15 87.4 123 47.2
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 2.7e-13 81.6 113 46.0
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 5.7e-11 73.9 101 50.5
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 7.4e-11 73.6 175 30.9
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 4.1e-09 67.8 104 37.5
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 6.9e-09 67.0 77 51.9
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 4.2e-06 57.8 67 34.3
Zm00001eb427210 Zea mays HOM05D000463 ORTHO05D001294 4.2e-06 57.8 110 31.8
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 5.5e-06 57.4 111 25.2
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 5.5e-06 57.4 66 34.8
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 7.2e-06 57.0 66 36.4
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 9.3e-06 56.6 66 34.8


User provided reference genes

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