Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 0.0e+00 1353.6 717 100.0
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 0.0e+00 1295.4 719 94.3
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 0.0e+00 1199.1 724 89.0
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 0.0e+00 1088.2 726 81.0
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 7.6e-247 857.4 738 62.5
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.9e-246 854.7 742 62.0
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 1.8e-243 846.3 737 62.0
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 2.3e-243 845.9 739 61.6
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 3.9e-243 845.1 741 60.9
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.6e-241 839.7 743 62.0
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.8e-241 838.2 739 60.9
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.8e-240 836.3 740 62.0
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 3.1e-240 835.5 738 60.7
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 2.0e-239 832.8 748 60.6
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.6e-239 832.4 739 60.6
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.3e-238 830.1 736 61.0
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.9e-238 828.9 739 60.4
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.1e-237 827.0 711 62.2
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 4.6e-236 821.6 753 59.4
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 8.7e-235 817.4 733 60.4
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 2.8e-233 812.4 735 61.0
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.5e-231 805.1 708 61.3
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 1.3e-230 803.5 798 56.0
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 5.0e-230 801.6 771 58.0
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 3.2e-229 798.9 706 60.3
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 3.2e-229 798.9 722 60.4
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 4.2e-229 798.5 721 58.9
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 6.1e-228 794.7 798 55.9
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 1.0e-227 793.9 735 59.3
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 4.3e-226 788.5 770 57.4
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.1e-224 783.9 758 56.5
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 4.1e-224 781.9 749 57.8
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 2.6e-223 779.2 758 56.2
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 1.6e-220 770.0 747 60.0
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 2.1e-220 769.6 736 59.0
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 1.4e-219 766.9 817 53.6
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 6.7e-219 764.6 741 57.5
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 7.4e-218 761.1 845 52.9
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.4e-216 756.9 845 52.8
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 2.6e-215 752.7 753 57.4
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 3.4e-215 752.3 770 54.4
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 5.9e-215 751.5 771 54.6
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 5.0e-214 748.4 808 54.6
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 5.0e-214 748.4 814 52.6
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.1e-213 747.3 832 52.5
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 4.2e-213 745.3 816 51.5
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 5.5e-213 745.0 734 57.6
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.6e-212 743.4 817 51.7
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 6.1e-212 741.5 691 59.0
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 2.0e-210 736.5 709 57.7
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 4.1e-208 728.8 603 63.5
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 9.1e-208 727.6 799 51.8
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 2.0e-207 726.5 826 52.2
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 5.9e-207 724.9 774 53.6
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 7.7e-207 724.5 725 56.8
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 2.9e-206 722.6 763 54.9
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 5.0e-206 721.8 810 51.2
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 8.5e-206 721.1 751 53.4
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 2.5e-205 719.5 823 51.5
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 7.2e-205 718.0 745 54.1
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 7.5e-202 708.0 745 55.3
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 9.7e-202 707.6 778 54.8
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 2.2e-201 706.4 729 53.5
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 2.8e-201 706.1 714 55.0
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 8.2e-201 704.5 775 52.4
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.1e-200 704.1 584 63.9
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 1.4e-200 703.7 719 55.8
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.6e-199 700.3 623 61.2
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 3.5e-199 699.1 755 53.1
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 2.9e-198 696.0 708 56.4
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 8.5e-198 694.5 693 56.4
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 8.5e-198 694.5 821 48.7
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.5e-197 693.7 718 54.6
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.9e-197 693.3 743 53.3
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 4.2e-197 692.2 731 53.6
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 4.2e-197 692.2 722 54.4
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 5.5e-197 691.8 737 53.5
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 9.4e-197 691.0 803 50.4
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 4.7e-196 688.7 743 54.8
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 6.8e-195 684.9 691 56.0
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 4.4e-194 682.2 738 54.2
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 5.7e-194 681.8 732 53.7
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 2.8e-193 679.5 731 51.8
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 6.3e-193 678.3 732 52.6
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 1.1e-192 677.6 708 54.2
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.4e-192 676.4 788 50.3
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 5.4e-192 675.2 782 53.6
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 7.0e-192 674.9 714 54.1
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 9.1e-192 674.5 714 53.9
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 2.0e-191 673.3 822 49.0
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 3.5e-191 672.5 718 53.8
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 5.0e-190 668.7 714 53.9
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 5.5e-189 665.2 715 54.3
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.2e-188 664.1 641 56.5
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.6e-188 663.7 717 53.7
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 3.6e-188 662.5 721 52.4
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 2.3e-187 659.8 807 49.4
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 3.4e-186 656.0 722 52.1
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 4.4e-186 655.6 717 53.1
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 4.4e-186 655.6 746 50.8
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.1e-184 651.0 728 51.9
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 3.8e-182 642.5 611 57.1
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 8.6e-182 641.3 712 52.8
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 1.1e-181 641.0 721 51.5
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 4.0e-179 632.5 771 50.3
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 5.8e-178 628.6 852 46.6
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 9.8e-178 627.9 725 51.3
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 2.2e-169 600.1 630 52.4
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.4e-168 597.4 707 50.5
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 2.8e-164 583.2 712 49.7
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 6.8e-163 578.6 439 64.7
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 3.4e-162 576.2 583 55.1
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.6e-159 567.4 829 42.7
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 4.6e-159 565.8 818 42.8
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 2.8e-156 556.6 750 45.5
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 2.7e-143 513.5 843 39.9
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.3e-142 511.1 479 55.3
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.1e-141 508.1 712 44.5
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 1.1e-133 481.5 476 54.6
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.9e-133 480.7 759 41.8
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 2.3e-110 404.1 752 37.5
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 4.7e-103 379.8 475 45.1
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.0e-94 350.5 299 58.2
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.5e-93 348.2 672 36.9
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.1e-91 340.5 485 41.9
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.0e-89 333.2 477 43.0
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.5e-88 330.9 591 38.4
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.8e-86 324.7 472 41.9
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.9e-82 309.7 436 40.4
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-79 301.6 507 37.7
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-79 301.6 507 37.7
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.8e-78 298.1 470 39.8
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.8e-76 290.8 474 39.0
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.0e-73 282.3 493 37.7
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.0e-70 270.4 522 39.7
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 2.2e-68 264.6 611 38.3
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 7.3e-64 249.6 384 42.2
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 9.8e-53 212.6 197 51.8
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.1e-42 178.3 203 51.2
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 8.4e-28 129.8 396 34.1
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 1.0e-25 122.9 85 62.4
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 7.6e-21 106.7 374 30.5
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 5.5e-19 100.5 71 69.0
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.9e-16 92.0 76 57.9
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.7e-15 87.8 206 33.5
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 1.8e-09 68.9 77 49.4
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 3.0e-09 68.2 74 44.6
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.0e-09 68.2 74 44.6
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 5.1e-09 67.4 53 54.7
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.1e-08 66.2 53 50.9
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 3.3e-08 64.7 49 63.3
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.3e-07 62.8 45 64.4
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.8e-07 61.6 53 47.2
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 8.2e-07 60.1 65 49.2
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 9.0e-06 56.6 307 27.7


User provided reference genes

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