Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G026560 Cucumis sativus L. HOM05D009154 ORTHO05D004310 2.4e-137 492.3 263 100.0
MELO3C012929.2 Cucumis melo HOM05D009154 ORTHO05D004310 7.4e-131 470.7 263 95.4
ClCG10G011600 Citrullus lanatus HOM05D009154 ORTHO05D004310 5.7e-115 417.9 264 87.9
Sed0019931 Sechium edule HOM05D009154 ORTHO05D004310 1.9e-86 323.2 249 74.7
Sed0003021 Sechium edule HOM05D009154 ORTHO05D004310 1.5e-67 260.4 239 65.3
MELO3C015909.2 Cucumis melo HOM05D009154 ORTHO05D004310 9.9e-35 151.4 231 45.5
ClCG09G004940 Citrullus lanatus HOM05D009154 ORTHO05D004310 8.4e-34 148.3 237 44.7
Sed0013714 Sechium edule HOM05D009154 ORTHO05D004310 9.2e-33 144.8 231 44.6
Sed0022617 Sechium edule HOM05D009154 ORTHO05D004310 7.8e-32 141.7 231 45.9
QL12p018988 Quercus lobata HOM05D009154 ORTHO05D004310 2.4e-28 130.2 243 41.6
Prupe.3G008100 Prunus persica HOM05D018099 ORTHO05D020712 3.9e-23 112.8 222 41.9
CsaV3_7G030120 Cucumis sativus L. HOM05D009154 ORTHO05D004310 5.1e-23 112.5 231 38.5
Lj1C14T15 Lonicera japonica HOM05D009154 ORTHO05D004310 1.1e-22 111.3 237 36.3
AUR62011764 Chenopodium quinoa HOM05D009154 ORTHO05D004310 2.5e-22 110.2 220 40.5
Hund16457 Selenicereus undatus HOM05D009154 ORTHO05D004310 3.3e-22 109.8 240 39.6
Medtr1g086670 Medicago truncatula HOM05D012173 ORTHO05D004310 1.6e-21 107.5 238 40.8
AUR62024610 Chenopodium quinoa HOM05D009154 ORTHO05D004310 3.6e-21 106.3 235 37.4
Ah.11g049040 Amaranthus hybridus HOM05D009154 ORTHO05D004310 1.2e-19 101.3 229 35.4
Manes.05G013000 Manihot esculenta HOM05D009154 ORTHO05D004310 4.5e-19 99.4 246 35.8
Sabra14G0087500 Salix brachista HOM05D009154 ORTHO05D004310 1.7e-18 97.4 190 40.0
Aqoxy5G02697 Aquilegia oxysepala HOM05D009154 ORTHO05D004310 1.1e-17 94.7 232 34.5
Lalb_Chr02g0146911 Lupinus albus HOM05D012173 ORTHO05D004310 1.1e-17 94.7 210 33.3
TPR.G33868 Trifolium pratense HOM05D007634 ORTHO05D004310 1.9e-17 94.0 240 33.8
DCAR_005743 Daucus carota HOM05D009154 ORTHO05D004310 2.4e-17 93.6 240 37.5
ECA236G0385 Erigeron canadensis HOM05D009154 ORTHO05D004310 3.2e-17 93.2 235 39.1
CANSAT54G0035 Cannabis sativa HOM05D009154 ORTHO05D014149 4.6e-16 89.4 156 40.4
HanXRQChr04g0108411 Helianthus annuus HOM05D009154 ORTHO05D004310 5.6e-14 82.4 232 34.9
Eucgr.K03556 Eucalyptus grandis HOM05D009154 ORTHO05D004310 7.4e-14 82.0 222 34.7
Psat6g160360 Pisum sativum HOM05D012173 ORTHO05D004310 6.2e-13 79.0 231 34.6
MD09G1285700 Malus domestica HOM05D018099 ORTHO05D020712 4.0e-12 76.3 225 34.7
MSTRG.5144 Avicennia marina HOM05D020384 ORTHO05D004310 9.0e-12 75.1 178 35.4
HanXRQChr08g0232271 Helianthus annuus HOM05D009154 ORTHO05D004310 7.6e-11 72.0 192 32.8
TWI18G0583 Tripterygium wilfordii HOM05D009814 ORTHO05D004310 7.6e-11 72.0 229 32.3
PGR044G0657 Punica granatum HOM05D009154 ORTHO05D004310 9.9e-11 71.6 226 32.3
ECA247G1084 Erigeron canadensis HOM05D009154 ORTHO05D004310 2.2e-10 70.5 218 32.6
arahy.Tifrunner.gnm1.ann1.DQ3PTC Arachis hypogaea HOM05D012173 ORTHO05D004310 2.9e-10 70.1 234 30.8
Lju926C3T5 Lonicera japonica HOM05D009154 ORTHO05D004310 4.9e-10 69.3 179 35.8
Lj6A693T64 Lonicera japonica HOM05D007634 ORTHO05D004310 1.1e-09 68.2 229 31.4
Duzib138G1730 Durio zibethinus HOM05D009814 ORTHO05D004310 1.4e-09 67.8 236 30.9
FAN09G2530 Fragaria x ananassa HOM05D018542 ORTHO05D014149 1.4e-09 67.8 191 29.8
Atru.chr2.269 Acer truncatum HOM05D013055 ORTHO05D004310 2.4e-09 67.0 177 37.9
ECA233G3364 Erigeron canadensis HOM05D009154 ORTHO05D004310 3.2e-09 66.6 195 31.8
Lsat_1_v5_gn_8_88920 Lactuca sativa HOM05D009154 ORTHO05D004310 3.2e-09 66.6 254 31.1
Thecc.01G317400 Theobroma cacao HOM05D009814 ORTHO05D004310 7.1e-09 65.5 236 30.9
Duzib211G0633 Durio zibethinus HOM05D009814 ORTHO05D004310 1.2e-08 64.7 234 28.6
EL10As5g23572 Beta vulgaris HOM05D009154 ORTHO05D004310 1.6e-08 64.3 227 31.3
COL.COLO4_23198 Corchorus olitorius HOM05D009814 ORTHO05D004310 1.6e-08 64.3 237 31.2
Lalb_Chr06g0166981 Lupinus albus HOM05D012173 ORTHO05D004310 1.6e-08 64.3 249 30.5
Gorai.004G145000 Gossypium raimondii HOM05D009814 ORTHO05D004310 2.7e-08 63.5 261 28.0
SalBow3G0760 Salvia bowleyana HOM05D020384 ORTHO05D012930 7.9e-08 62.0 183 31.1
VMungo0720G2010 Vigna mungo HOM05D012173 ORTHO05D004310 7.9e-08 62.0 240 28.8
DCAR_026994 Daucus carota HOM05D007634 ORTHO05D004310 1.0e-07 61.6 253 30.0
Gohir.A08G120000 Gossypium hirsutum HOM05D009814 ORTHO05D004310 1.0e-07 61.6 231 31.2
GSVIVG01031256001 Vitis vinifera HOM05D007634 ORTHO05D004310 1.0e-07 61.6 238 32.4
Lj3A834G63 Lonicera japonica HOM05D007634 ORTHO05D004310 5.1e-07 59.3 249 30.9
TWI36G1520 Tripterygium wilfordii HOM05D009814 ORTHO05D004310 8.7e-07 58.5 229 30.6
arahy.Tifrunner.gnm1.ann1.WF3AWK Arachis hypogaea HOM05D012173 ORTHO05D004310 1.1e-06 58.2 237 28.7
Oeu038954.2 Olea europaea HOM05D016587 ORTHO05D004310 1.1e-06 58.2 228 31.6
CSS0049163 Camellia sinensis var. sinensis HOM05D007634 ORTHO05D004310 1.9e-06 57.4 259 29.7
Gohir.D08G141000 Gossypium hirsutum HOM05D009814 ORTHO05D004310 1.9e-06 57.4 229 28.8
RcHm_v2.0_Chr3g0487151 Rosa chinensis HOM05D018099 ORTHO05D020712 3.3e-06 56.6 220 30.9
Glyma.02G010700 Glycine max HOM05D012173 ORTHO05D004310 4.3e-06 56.2 234 29.1
MD17G1278300 Malus domestica HOM05D018099 ORTHO05D020712 7.4e-06 55.5 186 30.1


User provided reference genes

Program Settings