Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.5e-136 488.8 253 100.0
CsaV3_UNG224670 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.7e-48 195.3 100 97.0
CsaV3_UNG224630 Cucumis sativus L. HOM05D001245 ORTHO05D004475 9.8e-48 194.5 103 93.2
CsaV3_UNG111830 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.7e-47 193.7 100 96.0
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 3.5e-45 186.0 100 92.0
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 4.7e-42 175.6 102 83.3
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 1.8e-38 163.7 102 75.5
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 2.0e-37 160.2 102 74.5
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 2.7e-37 159.8 102 75.5
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 2.7e-37 159.8 102 75.5
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 2.7e-37 159.8 102 75.5
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 2.7e-37 159.8 102 75.5
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 2.7e-37 159.8 102 75.5
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 3.5e-37 159.5 99 77.8
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 4.6e-37 159.1 102 74.5
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 7.8e-37 158.3 102 71.6
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 7.8e-37 158.3 102 71.6
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.7e-36 157.1 81 96.3
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 1.7e-36 157.1 102 74.5
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 3.0e-36 156.4 102 73.5
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 3.9e-36 156.0 102 74.5
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 5.0e-36 155.6 101 75.2
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 6.6e-36 155.2 102 71.6
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 1.5e-35 154.1 102 75.5
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 1.9e-35 153.7 101 72.3
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 1.9e-35 153.7 102 70.6
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 2.5e-35 153.3 102 69.6
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 5.6e-35 152.1 102 70.6
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 5.6e-35 152.1 102 70.6
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 7.3e-35 151.8 100 70.0
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 1.2e-34 151.0 102 68.6
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 1.2e-34 151.0 102 70.6
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 1.2e-34 151.0 102 70.6
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 1.6e-34 150.6 102 70.6
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 2.1e-34 150.2 102 73.5
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 2.1e-34 150.2 168 51.8
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 2.1e-34 150.2 102 69.6
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 2.1e-34 150.2 102 68.6
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 2.8e-34 149.8 102 67.6
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 3.6e-34 149.4 102 66.7
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 4.7e-34 149.1 101 70.3
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 6.2e-34 148.7 102 69.6
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 6.2e-34 148.7 100 71.0
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 8.0e-34 148.3 100 71.0
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 8.0e-34 148.3 100 71.0
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 1.4e-33 147.5 102 71.6
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 1.8e-33 147.1 101 70.3
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 4.0e-33 146.0 102 69.6
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 5.2e-33 145.6 102 68.6
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 6.8e-33 145.2 102 67.6
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.2e-32 144.4 104 69.2
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 1.5e-32 144.1 101 67.3
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 2.6e-32 143.3 118 66.1
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 4.4e-32 142.5 102 66.7
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 5.8e-32 142.1 102 64.7
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 9.8e-32 141.4 102 61.8
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 1.3e-31 141.0 112 63.4
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 1.7e-31 140.6 102 63.7
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 2.2e-31 140.2 102 64.7
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 2.2e-31 140.2 102 64.7
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 2.2e-31 140.2 131 58.0
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 2.9e-31 139.8 100 68.0
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 2.9e-31 139.8 102 63.7
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 4.9e-31 139.0 100 68.0
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 8.3e-31 138.3 101 62.4
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 1.4e-30 137.5 109 65.1
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 1.4e-30 137.5 100 66.0
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 1.4e-30 137.5 102 63.7
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 1.9e-30 137.1 102 63.7
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 1.9e-30 137.1 102 63.7
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 1.9e-30 137.1 102 64.7
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 4.1e-30 136.0 102 60.8
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 4.1e-30 136.0 96 66.7
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 7.0e-30 135.2 102 64.7
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 7.0e-30 135.2 102 61.8
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 9.2e-30 134.8 102 67.6
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.2e-29 134.4 107 60.7
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 1.2e-29 134.4 103 65.0
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 2.0e-29 133.7 105 62.9
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 2.7e-29 133.3 102 64.7
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 1.0e-28 131.3 91 67.0
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 1.0e-28 131.3 100 62.0
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 1.7e-28 130.6 102 59.8
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 5.0e-28 129.0 102 60.8
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 1.9e-27 127.1 99 63.6
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 3.3e-27 126.3 101 57.4
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 5.6e-27 125.6 85 69.4
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 9.5e-27 124.8 101 57.4
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 2.1e-26 123.6 134 49.3
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 3.6e-26 122.9 102 58.8
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 1.4e-25 120.9 102 59.8
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 1.2e-24 117.9 86 67.4
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.2e-23 113.6 100 62.0
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 2.2e-23 113.6 113 52.2
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 2.9e-23 113.2 101 56.4
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 3.7e-23 112.8 95 61.1
RcHm_v2.0_Chr7g0211681 Rosa chinensis HOM05D001245 ORTHO05D004475 3.7e-23 112.8 77 66.2
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 1.9e-22 110.5 100 61.0
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 3.1e-17 93.2 101 41.6
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 8.9e-17 91.7 98 44.9
CsaV3_5G018940 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.2e-16 91.3 52 92.3
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 1.4e-14 84.3 100 46.0
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 2.7e-13 80.1 99 44.4
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 3.0e-12 76.6 52 69.2
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 6.6e-12 75.5 64 59.4
SHI09208 Sapria himalayana HOM05D001245 ORTHO05D000023 1.5e-11 74.3 50 62.0
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 3.3e-11 73.2 52 65.4
Pp3c19_810 Physcomitrium patens HOM05D001245 ORTHO05D004475 3.3e-11 73.2 84 44.0
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 5.6e-11 72.4 81 38.3
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 2.8e-10 70.1 64 54.7
Eucgr.B02095 Eucalyptus grandis HOM05D001245 ORTHO05D004475 8.1e-10 68.6 78 47.4
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 1.1e-09 68.2 103 35.0
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 3.1e-09 66.6 102 38.2
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 1.2e-08 64.7 99 39.4
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 1.9e-06 57.4 36 83.3
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.9e-06 57.4 36 83.3
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 1.9e-06 57.4 36 83.3
CsaV3_1G026630 Cucumis sativus L. HOM05D004380 ORTHO05D005134 9.3e-06 55.1 54 61.1


User provided reference genes

Program Settings