Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G026500 Cucumis sativus L. HOM05D001245 ORTHO05D004475 8.6e-57 223.4 110 100.0
CsaV3_UNG224660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.3e-33 146.4 77 89.6
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 7.3e-32 140.6 103 68.9
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 2.9e-28 128.6 94 67.0
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.0e-25 118.6 60 88.3
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 4.0e-22 108.2 60 80.0
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 9.9e-21 103.6 59 76.3
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 4.1e-19 98.2 60 68.3
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 4.1e-19 98.2 60 68.3
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 9.2e-19 97.1 56 73.2
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 2.1e-18 95.9 58 72.4
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 2.7e-18 95.5 60 70.0
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 2.7e-18 95.5 60 66.7
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 2.7e-18 95.5 58 69.0
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 3.5e-18 95.1 60 66.7
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 4.6e-18 94.7 60 70.0
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 4.6e-18 94.7 60 66.7
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 7.8e-18 94.0 79 55.7
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 7.8e-18 94.0 60 68.3
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 7.8e-18 94.0 56 69.6
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 7.8e-18 94.0 60 65.0
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 1.3e-17 93.2 56 71.4
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 1.3e-17 93.2 56 71.4
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 1.7e-17 92.8 58 69.0
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 1.7e-17 92.8 54 74.1
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 2.3e-17 92.4 60 63.3
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 2.3e-17 92.4 58 69.0
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 3.0e-17 92.0 60 65.0
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 3.0e-17 92.0 59 62.7
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 3.0e-17 92.0 58 69.0
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 3.0e-17 92.0 60 66.7
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 3.0e-17 92.0 59 64.4
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 3.0e-17 92.0 60 68.3
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 3.9e-17 91.7 59 67.8
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 3.9e-17 91.7 60 68.3
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 3.9e-17 91.7 60 68.3
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 5.1e-17 91.3 60 68.3
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 5.1e-17 91.3 60 66.7
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 6.6e-17 90.9 54 72.2
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 6.6e-17 90.9 54 72.2
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 6.6e-17 90.9 54 72.2
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 6.6e-17 90.9 60 65.0
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 8.7e-17 90.5 60 63.3
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 8.7e-17 90.5 58 65.5
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 8.7e-17 90.5 58 63.8
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 1.1e-16 90.1 56 66.1
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 1.1e-16 90.1 60 61.7
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 1.1e-16 90.1 58 63.8
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 1.5e-16 89.7 60 61.7
SHI09206 Sapria himalayana HOM05D001245 ORTHO05D004475 1.5e-16 89.7 60 68.3
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 1.9e-16 89.4 60 65.0
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 1.9e-16 89.4 54 70.4
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 1.9e-16 89.4 54 70.4
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 1.9e-16 89.4 56 69.6
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 2.5e-16 89.0 106 44.3
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 3.3e-16 88.6 62 59.7
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 3.3e-16 88.6 60 63.3
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 4.3e-16 88.2 56 66.1
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 4.3e-16 88.2 56 66.1
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 4.3e-16 88.2 62 59.7
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 4.3e-16 88.2 58 63.8
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 5.6e-16 87.8 58 63.8
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 9.6e-16 87.0 54 68.5
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 9.6e-16 87.0 56 66.1
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 9.6e-16 87.0 60 61.7
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 9.6e-16 87.0 60 61.7
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 9.6e-16 87.0 60 61.7
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 9.6e-16 87.0 60 61.7
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 1.2e-15 86.7 58 62.1
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 1.2e-15 86.7 58 63.8
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 1.6e-15 86.3 54 68.5
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 2.1e-15 85.9 54 66.7
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 2.1e-15 85.9 54 70.4
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 2.8e-15 85.5 54 66.7
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 2.8e-15 85.5 54 68.5
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 3.6e-15 85.1 59 61.0
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 4.7e-15 84.7 60 61.7
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 4.7e-15 84.7 60 61.7
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 4.7e-15 84.7 54 66.7
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 4.7e-15 84.7 54 66.7
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 8.1e-15 84.0 56 62.5
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 1.1e-14 83.6 47 72.3
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 1.4e-14 83.2 60 60.0
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 1.8e-14 82.8 54 64.8
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 1.8e-14 82.8 60 60.0
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 2.4e-14 82.4 54 64.8
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 2.4e-14 82.4 54 68.5
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 3.1e-14 82.0 54 64.8
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 3.1e-14 82.0 54 64.8
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 4.0e-14 81.6 56 64.3
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 4.0e-14 81.6 56 60.7
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 1.5e-13 79.7 60 60.0
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.5e-13 79.7 38 89.5
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 3.4e-13 78.6 54 61.1
Duzib041G0266 Durio zibethinus HOM05D001245 ORTHO05D005230 3.5e-10 68.6 47 57.4
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 7.3e-08 60.8 54 51.9


User provided reference genes

Program Settings