Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 0.0e+00 1247.3 631 100.0
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 0.0e+00 1083.9 624 89.4
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.1e-281 973.0 649 79.7
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 3.2e-281 971.5 649 79.5
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 2.8e-253 878.6 650 73.5
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.4e-188 663.7 528 66.5
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 1.9e-188 663.3 493 69.8
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 2.1e-187 659.8 649 56.7
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 1.7e-186 656.8 627 58.7
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 5.1e-186 655.2 633 58.6
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 6.2e-184 648.3 491 67.6
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.8e-183 646.7 633 58.3
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 4.0e-183 645.6 640 56.7
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 8.9e-183 644.4 635 58.1
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 1.5e-182 643.7 622 58.8
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 3.4e-182 642.5 601 58.2
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 7.5e-182 641.3 653 56.5
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 7.5e-182 641.3 599 59.1
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 1.9e-180 636.7 606 58.3
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 5.4e-180 635.2 648 54.3
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 7.1e-180 634.8 575 60.0
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 2.1e-179 633.3 490 68.2
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 2.7e-179 632.9 658 55.2
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 7.8e-179 631.3 624 56.7
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 1.3e-178 630.6 579 58.0
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 1.7e-178 630.2 529 62.0
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 2.3e-178 629.8 529 62.2
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 3.0e-178 629.4 482 66.8
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 3.9e-178 629.0 477 67.3
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 6.6e-178 628.2 529 62.0
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 1.9e-177 626.7 547 62.5
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 2.5e-177 626.3 535 62.4
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 3.3e-177 625.9 482 66.4
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 4.3e-177 625.5 484 65.7
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 5.6e-177 625.2 485 64.9
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 7.3e-177 624.8 525 63.0
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 9.5e-177 624.4 483 67.1
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 2.8e-176 622.9 482 66.4
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 2.8e-176 622.9 483 66.5
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 1.1e-175 620.9 636 55.3
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 1.8e-175 620.2 545 62.0
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 2.4e-175 619.8 561 58.8
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 5.2e-175 618.6 473 66.4
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 8.9e-175 617.8 536 60.4
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 1.5e-174 617.1 526 61.8
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 2.0e-174 616.7 564 59.0
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 1.3e-173 614.0 520 61.9
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 6.4e-173 611.7 568 59.2
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 8.4e-173 611.3 508 62.4
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 1.4e-172 610.5 629 56.3
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 1.4e-172 610.5 523 60.8
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 4.2e-172 609.0 476 66.6
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 9.2e-172 607.8 632 56.2
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 1.2e-171 607.4 603 56.1
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 1.2e-171 607.4 489 63.4
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 1.2e-171 607.4 521 60.5
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 4.6e-171 605.5 516 61.8
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 6.0e-171 605.1 495 62.6
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 7.8e-171 604.7 562 57.3
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 7.8e-171 604.7 495 62.6
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 1.0e-170 604.4 637 53.8
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 1.3e-170 604.0 568 55.5
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 3.0e-170 602.8 562 57.1
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 3.9e-170 602.4 460 68.0
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 5.1e-170 602.1 649 52.4
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 1.5e-169 600.5 648 52.8
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 1.5e-169 600.5 516 62.8
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 4.7e-168 595.5 531 58.6
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 6.2e-168 595.1 575 57.7
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 2.4e-167 593.2 495 62.6
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 2.4e-167 593.2 737 50.5
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 3.8e-165 585.9 530 58.9
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 2.4e-164 583.2 480 61.9
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 5.4e-164 582.0 490 59.4
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 9.3e-164 581.3 514 59.5
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 9.3e-164 581.3 717 49.9
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.1e-163 580.1 653 49.8
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 1.3e-162 577.4 554 56.1
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.9e-161 573.5 626 52.6
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 3.3e-161 572.8 592 52.9
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 7.3e-161 571.6 483 61.7
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 6.2e-160 568.5 493 62.5
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 3.1e-159 566.2 637 51.3
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 6.9e-159 565.1 587 53.5
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 1.7e-157 560.5 627 52.0
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 1.1e-156 557.8 604 54.5
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 2.4e-156 556.6 628 52.9
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 4.2e-156 555.8 491 59.1
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 2.5e-153 546.6 546 57.0
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.8e-151 540.4 559 55.5
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 4.5e-150 535.8 575 55.0
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 3.8e-149 532.7 394 70.8
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 1.9e-148 530.4 557 55.3
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 7.1e-148 528.5 506 58.1
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 3.7e-144 516.2 572 51.7
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 4.2e-140 502.7 393 66.4
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 8.7e-138 495.0 535 50.8
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.9e-133 479.9 617 45.5
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 1.4e-132 477.6 537 48.4
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 1.9e-132 477.2 414 64.3
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 2.5e-132 476.9 524 54.2
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 3.9e-130 469.5 385 62.6
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 1.8e-127 460.7 511 52.4
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 1.6e-123 447.6 519 48.4
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.4e-119 434.5 485 48.5
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 7.4e-113 412.1 296 71.6
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 1.8e-111 407.5 512 47.3
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 2.6e-110 403.7 528 44.3
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 1.7e-109 401.0 310 67.7
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.7e-102 377.1 373 56.0
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 4.0e-98 363.2 375 51.5
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 1.8e-95 354.4 464 44.2
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 1.9e-92 344.4 460 42.0
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 5.9e-86 322.8 385 51.4
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 2.3e-85 320.9 345 51.3
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 1.4e-82 311.6 563 35.7
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 3.1e-82 310.5 270 60.4
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 1.5e-81 308.1 326 55.2
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 7.5e-81 305.8 357 50.4
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 9.8e-81 305.4 357 50.4
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 3.2e-79 300.4 195 79.5
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 4.1e-79 300.1 384 46.6
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 5.4e-79 299.7 283 59.4
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 5.0e-77 293.1 368 50.0
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 1.7e-69 268.1 260 57.7
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 4.1e-63 246.9 294 46.3
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 4.7e-59 233.4 341 44.9
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 2.0e-57 228.0 232 55.6
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 4.4e-57 226.9 523 31.7
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 7.6e-57 226.1 194 63.4
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.3e-56 225.3 193 61.1
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.9e-52 211.5 268 44.0
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 6.2e-51 206.5 180 60.6
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.2e-49 202.2 247 45.7
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.2e-49 202.2 246 45.9
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 5.1e-45 186.8 154 68.2
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 8.7e-45 186.0 147 71.4
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.6e-43 181.8 152 65.1
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 8.1e-43 179.5 98 85.7
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 1.8e-37 161.8 117 69.2
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 3.0e-37 161.0 159 57.9
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 8.1e-35 152.9 228 39.9
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.1e-34 152.5 241 39.0
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 3.8e-32 144.1 165 48.5
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 5.7e-28 130.2 152 50.7
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 7.4e-28 129.8 160 45.0
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 1.4e-26 125.6 93 62.4
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 4.5e-25 120.6 128 44.5
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 3.8e-24 117.5 242 35.1
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 2.1e-22 111.7 255 32.2
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.4e-18 99.0 70 68.6
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 1.7e-16 92.0 74 58.1
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 2.9e-16 91.3 74 59.5
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 4.2e-15 87.4 72 59.7
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 4.6e-14 84.0 59 72.9
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 7.9e-14 83.2 51 82.4
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 1.5e-12 79.0 65 61.5
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 2.8e-11 74.7 80 50.0
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.7e-11 74.3 70 45.7
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 3.1e-10 71.2 49 65.3
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 5.3e-10 70.5 49 63.3
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 9.1e-10 69.7 49 63.3
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 9.1e-10 69.7 53 56.6
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.5e-09 68.9 122 37.7
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 2.0e-09 68.6 52 63.5
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 3.8e-08 64.3 51 56.9
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 3.8e-08 64.3 51 60.8
arahy.Tifrunner.gnm1.ann1.6Z8QT9 Arachis hypogaea HOM05D001329 ORTHO05D010271 1.4e-07 62.4 52 53.8
AUR62022240 Chenopodium quinoa HOM05D001329 ORTHO05D004946 4.2e-07 60.8 85 40.0
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 4.2e-07 60.8 54 51.9


User provided reference genes

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