Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G023050 Cucumis sativus L. HOM05D004888 ORTHO05D005792 1.1e-37 159.5 83 100.0
MELO3C030728.2 Cucumis melo HOM05D004888 ORTHO05D005792 5.7e-29 130.6 68 97.1
ClCG05G014360 Citrullus lanatus HOM05D004888 ORTHO05D005792 4.8e-28 127.5 75 89.3
Sed0022426 Sechium edule HOM05D004888 ORTHO05D005792 1.3e-25 119.4 69 85.5
Cfa020361 Carpinus fangiana HOM05D004888 ORTHO05D005792 2.5e-24 115.2 66 83.3
TWI39G0566 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 4.2e-24 114.4 75 74.7
Sed0003457 Sechium edule HOM05D004888 ORTHO05D005792 5.5e-24 114.0 75 74.7
THA.LOC104817873 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 5.5e-24 114.0 80 72.5
Haze_09660 Corylus avellana HOM05D004888 ORTHO05D005792 7.2e-24 113.6 66 81.8
GSVIVG01037626001 Vitis vinifera HOM05D004888 ORTHO05D005792 7.2e-24 113.6 75 77.3
Duzib268G1286 Durio zibethinus HOM05D004888 ORTHO05D005792 9.4e-24 113.2 75 76.0
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 9.4e-24 113.2 75 76.0
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 1.2e-23 112.8 75 76.0
CiPaw.12G128800 Carya illinoinensis HOM05D004888 ORTHO05D005792 1.6e-23 112.5 75 76.0
Cc05_g13810 Coffea canephora HOM05D004888 ORTHO05D005792 1.6e-23 112.5 75 77.3
COL.COLO4_09650 Corchorus olitorius HOM05D004888 ORTHO05D005792 2.1e-23 112.1 75 76.0
Medtr5g092160 Medicago truncatula HOM05D004888 ORTHO05D005792 3.6e-23 111.3 73 75.3
TPR.G1165 Trifolium pratense HOM05D004888 ORTHO05D005792 3.6e-23 111.3 75 73.3
CAN.G337.120 Capsicum annuum HOM05D004888 ORTHO05D005792 4.7e-23 110.9 75 77.3
TWI38G0633 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 4.7e-23 110.9 75 73.3
Ciclev10009934m.g Citrus clementina HOM05D004888 ORTHO05D005792 6.1e-23 110.5 80 67.5
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 6.1e-23 110.5 75 77.3
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 8.0e-23 110.2 73 74.0
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 8.0e-23 110.2 80 66.2
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 8.0e-23 110.2 80 66.2
Carub.0003s2047 Capsella rubella HOM05D004888 ORTHO05D005792 1.0e-22 109.8 75 69.3
Dinv40745 Davidia involucrata HOM05D004888 ORTHO05D005792 1.0e-22 109.8 75 77.3
Gohir.A04G018500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.0e-22 109.8 73 76.7
Gohir.D05G367500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.0e-22 109.8 73 76.7
Gorai.009G435100 Gossypium raimondii HOM05D004888 ORTHO05D005792 1.0e-22 109.8 73 76.7
Solyc07g064470.4 Solanum lycopersicum HOM05D004888 ORTHO05D005792 1.0e-22 109.8 75 76.0
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 1.0e-22 109.8 75 76.0
THA.LOC104798774 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 1.0e-22 109.8 75 77.3
Ciclev10009938m.g Citrus clementina HOM05D004888 ORTHO05D005792 1.4e-22 109.4 80 66.2
Glyma.14G024900 Glycine max HOM05D004888 ORTHO05D005792 1.8e-22 109.0 75 73.3
Atru.chr2.3374 Acer truncatum HOM05D004888 ORTHO05D005792 2.3e-22 108.6 75 73.3
Duzib170G0778 Durio zibethinus HOM05D004888 ORTHO05D005792 2.3e-22 108.6 75 72.0
Duzib170G1055 Durio zibethinus HOM05D004888 ORTHO05D005792 2.3e-22 108.6 75 72.0
MD11G1221000 Malus domestica HOM05D004888 ORTHO05D005792 2.3e-22 108.6 75 72.0
Phvul.008G266100 Phaseolus vulgaris HOM05D004888 ORTHO05D005792 2.3e-22 108.6 75 72.0
Prupe.4G211200 Prunus persica HOM05D004888 ORTHO05D005792 2.3e-22 108.6 75 73.3
Sc03g0008650 Simmondsia chinensis HOM05D004888 ORTHO05D005792 2.3e-22 108.6 66 78.8
Aa31LG8G7320 Aethionema arabicum HOM05D004888 ORTHO05D005792 3.0e-22 108.2 75 73.3
Cpa.g.sc97.18 Carica papaya HOM05D004888 ORTHO05D005792 3.0e-22 108.2 75 72.0
Psat2g013600 Pisum sativum HOM05D004888 ORTHO05D005792 3.0e-22 108.2 75 72.0
CARHR040840 Cardamine hirsuta HOM05D004888 ORTHO05D005792 4.0e-22 107.8 80 65.0
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 4.0e-22 107.8 75 74.7
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 4.0e-22 107.8 75 74.7
AT3G20510 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 6.7e-22 107.1 75 68.0
arahy.Tifrunner.gnm1.ann1.7UQ7HQ Arachis hypogaea HOM05D004888 ORTHO05D005792 6.7e-22 107.1 66 75.8
arahy.Tifrunner.gnm1.ann1.UMZK2D Arachis hypogaea HOM05D004888 ORTHO05D005792 6.7e-22 107.1 66 75.8
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 8.8e-22 106.7 75 73.3
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 8.8e-22 106.7 75 73.3
Nitab4.5_0001913g0080 Nicotiana tabacum HOM05D004888 ORTHO05D005792 8.8e-22 106.7 75 74.7
A03p41780 Brassica napus HOM05D001160 ORTHO05D005792 1.1e-21 106.3 75 70.7
FAN21G0776 Fragaria x ananassa HOM05D004888 ORTHO05D005792 1.1e-21 106.3 75 74.7
FAN25G0554 Fragaria x ananassa HOM05D000287 ORTHO05D002423 1.1e-21 106.3 75 74.7
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 1.1e-21 106.3 75 73.3
Sp3g18510 Schrenkiella parvula HOM05D004888 ORTHO05D005792 1.1e-21 106.3 75 69.3
vmacro11732 Vaccinium macrocarpon HOM05D004888 ORTHO05D005792 1.1e-21 106.3 75 73.3
Actinidia05101 Actinidia chinensis HOM05D004888 ORTHO05D005792 1.5e-21 105.9 75 76.0
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 1.5e-21 105.9 75 73.3
Oeu007587.1 Olea europaea HOM05D004888 ORTHO05D005792 1.5e-21 105.9 75 73.3
AL3G34290 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 2.0e-21 105.5 75 66.7
FvH4_3g22450 Fragaria vesca HOM05D004888 ORTHO05D005792 2.0e-21 105.5 75 73.3
FAN11G0846 Fragaria x ananassa HOM05D000287 ORTHO05D002423 2.0e-21 105.5 75 73.3
RcHm_v2.0_Chr5g0039111 Rosa chinensis HOM05D004888 ORTHO05D005792 2.0e-21 105.5 75 73.3
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 2.0e-21 105.5 75 72.0
VMungo0647G2125 Vigna mungo HOM05D004888 ORTHO05D005792 2.0e-21 105.5 75 69.3
Thhalv10021782m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 2.6e-21 105.1 75 68.0
Hma1.2p1_1222F.1_g268220 Hydrangea macrophylla HOM05D004888 ORTHO05D005792 2.6e-21 105.1 75 70.7
PGSC0003DMG400022222 Solanum tuberosum HOM05D004888 ORTHO05D005792 2.6e-21 105.1 66 81.8
BcaC01g03552 Brassica carinata HOM05D001160 ORTHO05D001092 3.3e-21 104.8 75 68.0
BolC3t17405H Brassica oleracea HOM05D001160 ORTHO05D001092 3.3e-21 104.8 75 68.0
CARHR096270 Cardamine hirsuta HOM05D004888 ORTHO05D005792 3.3e-21 104.8 75 65.3
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 3.3e-21 104.8 75 70.7
Actinidia36945 Actinidia chinensis HOM05D004888 ORTHO05D005792 4.4e-21 104.4 75 73.3
EL10Ac4g07839 Beta vulgaris HOM05D004888 ORTHO05D005792 4.4e-21 104.4 75 72.0
BcaNung06349 Brassica carinata HOM05D004888 ORTHO05D005792 4.4e-21 104.4 75 68.0
Eucgr.F03460 Eucalyptus grandis HOM05D004888 ORTHO05D005792 4.4e-21 104.4 75 69.3
Oeu020120.2 Olea europaea HOM05D004888 ORTHO05D005792 4.4e-21 104.4 75 70.7
Sabra16G0288800 Salix brachista HOM05D004888 ORTHO05D005792 4.4e-21 104.4 75 69.3
AUR62015745 Chenopodium quinoa HOM05D004888 ORTHO05D005792 5.7e-21 104.0 75 70.7
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 5.7e-21 104.0 75 72.0
BcaB04g19111 Brassica carinata HOM05D004888 ORTHO05D005792 7.5e-21 103.6 75 66.7
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 7.5e-21 103.6 75 70.7
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 7.5e-21 103.6 75 70.7
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 7.5e-21 103.6 75 68.0
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 7.5e-21 103.6 75 68.0
Hund23258 Selenicereus undatus HOM05D004888 ORTHO05D005792 7.5e-21 103.6 75 70.7
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 7.5e-21 103.6 75 70.7
TAR627G0539 Trochodendron aralioides HOM05D004888 ORTHO05D005792 7.5e-21 103.6 66 75.8
AUR62020467 Chenopodium quinoa HOM05D004888 ORTHO05D005792 9.7e-21 103.2 75 70.7
MD03G1204200 Malus domestica HOM05D004888 ORTHO05D005792 9.7e-21 103.2 75 69.3
PSO541G5647 Papaver somniferum HOM05D004888 ORTHO05D005792 9.7e-21 103.2 75 70.7
PSO675G7988 Papaver somniferum HOM05D004888 ORTHO05D005792 9.7e-21 103.2 75 70.7
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 9.7e-21 103.2 75 65.3
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 9.7e-21 103.2 75 70.7
Ca_06312_v3 Cicer arietinum L. HOM05D004888 ORTHO05D005792 1.3e-20 102.8 73 68.5
ATR0752G132 Amborella trichopoda HOM05D004888 ORTHO05D005792 1.7e-20 102.4 66 71.2
LjContig00272g0005832 Lotus japonicus HOM05D004888 ORTHO05D005792 1.7e-20 102.4 75 70.7
Manes.15G072900 Manihot esculenta HOM05D004888 ORTHO05D005792 1.7e-20 102.4 75 66.7
Ah.04g165810 Amaranthus hybridus HOM05D004888 ORTHO05D005792 2.2e-20 102.1 75 70.7
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 2.2e-20 102.1 75 69.3
AT1G50740 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 2.8e-20 101.7 80 63.8
Thhalv10011871m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 2.8e-20 101.7 80 63.8
Aqoxy1G03261 Aquilegia oxysepala HOM05D004888 ORTHO05D005792 3.7e-20 101.3 75 66.7
A05p28330 Brassica napus HOM05D001160 ORTHO05D001092 3.7e-20 101.3 75 66.7
ECA236G1052 Erigeron canadensis HOM05D004888 ORTHO05D005792 3.7e-20 101.3 75 69.3
Nn1g07117 Nelumbo nucifera HOM05D004888 ORTHO05D005792 3.7e-20 101.3 75 66.7
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 3.7e-20 101.3 75 68.0
Sabra11G0123700 Salix brachista HOM05D004888 ORTHO05D005792 4.8e-20 100.9 75 66.7
Peaxi162Scf00387g00025 Petunia axillaris HOM05D004888 ORTHO05D005792 6.3e-20 100.5 66 75.8
AL1G58480 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 8.2e-20 100.1 80 62.5
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 8.2e-20 100.1 75 68.0
BolC5t33098H Brassica oleracea HOM05D004888 ORTHO05D005792 1.4e-19 99.4 75 65.3
C05p43820 Brassica napus HOM05D001160 ORTHO05D001092 1.8e-19 99.0 75 65.3
BraA05t21716Z Brassica rapa HOM05D001160 ORTHO05D001092 2.4e-19 98.6 75 64.0
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 2.4e-19 98.6 75 68.0
Hund02067 Selenicereus undatus HOM05D004888 ORTHO05D005792 4.1e-19 97.8 75 65.3
CDE05G3279 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 9.1e-19 96.7 75 61.3
Lalb_Chr04g0248511 Lupinus albus HOM05D004888 ORTHO05D005792 9.1e-19 96.7 75 65.3
HanXRQChr11g0336191 Helianthus annuus HOM05D004888 ORTHO05D005792 1.2e-18 96.3 75 65.3
Aa31LG10G3270 Aethionema arabicum HOM05D004888 ORTHO05D005792 5.9e-18 94.0 73 63.0
Zm00001eb048800 Zea mays HOM05D004888 ORTHO05D005792 7.7e-18 93.6 80 58.8
Zm00001eb219860 Zea mays HOM05D004888 ORTHO05D005792 7.7e-18 93.6 66 65.2
CDE11G1067 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 1.7e-17 92.4 75 58.7
MBI18_g28089_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 3.8e-17 91.3 75 58.7
Os03g0568500 Oryza sativa ssp. japonica HOM05D004888 ORTHO05D005792 3.8e-17 91.3 66 63.6
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 5.0e-17 90.9 73 64.4
SHI31853 Sapria himalayana HOM05D004888 ORTHO05D005792 5.0e-17 90.9 74 60.8
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 8.5e-17 90.1 76 60.5
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 1.5e-16 89.4 76 60.5
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 1.5e-16 89.4 76 60.5
MBI18_g45255_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 1.5e-16 89.4 67 61.2
Mapoly0043s0001 Marchantia polymorpha HOM05D004888 ORTHO05D005792 1.9e-16 89.0 75 58.7
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 3.2e-16 88.2 76 60.5
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 4.2e-16 87.8 76 59.2
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 4.2e-16 87.8 76 59.2
HanXRQChr09g0242141 Helianthus annuus HOM05D004888 ORTHO05D005792 2.7e-15 85.1 75 60.0
SMO270G0016 Selaginella moellendorffii HOM05D004888 ORTHO05D005792 1.4e-14 82.8 68 57.4
Cfa020359 Carpinus fangiana HOM05D000232 ORTHO05D000145 3.0e-14 81.6 46 78.3
Pp3c25_1060 Physcomitrium patens HOM05D004888 ORTHO05D005792 2.0e-13 79.0 82 52.4
Nn1g03567 Nelumbo nucifera HOM05D004888 ORTHO05D005792 6.3e-12 73.9 75 52.0
Nitab4.5_0005048g0090 Nicotiana tabacum HOM05D004888 ORTHO05D005792 8.3e-12 73.6 44 81.8
HPP92_001782 Vanilla planifolia HOM05D004888 ORTHO05D005792 1.4e-11 72.8 66 51.5
Sp7g03160 Schrenkiella parvula HOM05D004888 ORTHO05D005792 7.0e-11 70.5 41 73.2
CBR_g50174 Chara braunii HOM05D004888 ORTHO05D005792 2.7e-10 68.6 75 48.0
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 3.5e-10 68.2 70 47.1
Sc16g0006310 Simmondsia chinensis HOM05D004888 ORTHO05D005792 1.1e-08 63.2 75 44.0
Sc07g0006180 Simmondsia chinensis HOM05D004888 ORTHO05D005792 3.2e-08 61.6 75 50.7
RcHm_v2.0_Chr7g0216541 Rosa chinensis HOM05D004888 ORTHO05D005792 1.6e-07 59.3 54 61.1
Gohir.A01G079000 Gossypium hirsutum HOM05D004888 ORTHO05D005792 8.0e-07 57.0 48 66.7
Zm00001eb106080 Zea mays HOM05D004888 ORTHO05D005792 8.0e-07 57.0 62 50.0
Zm00001eb424650 Zea mays HOM05D004475 ORTHO05D005235 1.8e-06 55.8 72 38.9
Sc16g0006350 Simmondsia chinensis HOM05D004888 ORTHO05D005792 4.0e-06 54.7 66 40.9
CBR_g47126 Chara braunii HOM05D004956 ORTHO05D006284 8.8e-06 53.5 58 48.3


User provided reference genes

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