Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1756.9 883 100.0
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1701.8 883 96.4
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1624.8 885 91.9
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1507.3 884 86.4
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1501.9 885 85.3
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1225.7 880 70.9
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1201.8 920 66.2
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1196.4 891 69.2
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1188.3 930 66.5
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1187.9 890 68.2
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1187.6 891 68.7
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1186.4 873 70.0
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1185.2 898 67.8
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1184.1 861 69.8
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1184.1 891 68.6
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1182.2 884 69.7
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1181.4 892 68.2
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1179.9 891 68.4
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1174.1 885 67.2
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1173.3 878 68.1
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1172.9 853 69.8
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1169.8 894 67.1
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1158.7 890 67.2
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1158.3 906 67.0
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1157.9 890 66.6
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1152.1 883 66.6
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1149.4 889 66.5
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1148.3 880 67.2
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1146.7 918 65.1
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1143.6 893 66.1
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1142.9 912 65.2
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1142.9 902 66.0
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1140.6 912 65.6
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1139.8 880 67.0
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1137.5 889 65.9
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1136.7 887 64.8
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1134.8 893 66.7
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1133.2 892 65.2
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1131.3 881 65.0
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1130.9 887 66.0
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1130.5 890 65.7
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1129.8 899 66.2
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1129.0 911 64.8
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1128.2 887 64.6
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1127.9 907 64.2
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1127.9 878 65.0
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1127.9 887 66.3
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1126.3 881 65.7
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1124.0 926 63.2
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1123.6 910 64.6
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1123.6 900 65.4
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1123.6 872 66.7
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1122.1 883 64.9
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1122.1 891 65.7
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1121.3 894 65.0
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1120.9 910 64.4
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1120.5 898 64.7
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1120.1 910 64.2
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1118.6 881 64.8
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1118.2 933 63.1
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1118.2 891 65.0
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1117.8 889 64.9
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1116.3 913 64.1
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1109.7 892 64.7
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1108.6 885 65.2
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1107.4 934 62.6
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1105.5 818 68.6
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1101.3 892 63.1
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1100.9 896 64.7
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1099.0 880 63.4
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1098.6 903 64.5
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1097.0 883 64.8
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1090.1 956 59.9
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1082.8 883 64.4
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1080.9 748 73.0
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1080.1 919 60.9
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1079.3 879 63.8
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1078.2 835 65.4
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1077.8 895 63.9
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1076.2 883 64.3
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1075.5 886 62.0
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.2e-311 1072.8 882 65.5
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 2.7e-310 1068.5 885 62.6
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 2.7e-310 1068.5 893 62.8
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 3.5e-310 1068.1 888 63.1
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 3.5e-310 1068.1 905 62.4
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 5.0e-309 1064.3 891 63.1
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 2.3e-306 1055.4 905 61.4
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 3.1e-306 1055.0 883 63.4
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 4.0e-306 1054.7 907 59.8
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 3.4e-305 1051.6 888 61.6
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 1.7e-304 1049.3 926 60.3
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 8.3e-304 1047.0 897 63.0
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 5.4e-303 1044.3 889 62.3
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 9.2e-303 1043.5 908 62.2
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 4.6e-302 1041.2 896 61.5
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 1.3e-301 1039.6 910 61.6
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 2.3e-301 1038.9 912 62.6
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 2.3e-301 1038.9 881 61.2
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 5.1e-301 1037.7 880 61.5
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 1.5e-300 1036.2 910 61.6
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 2.4e-298 1028.9 865 62.0
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 2.4e-298 1028.9 898 61.5
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 6.8e-298 1027.3 898 61.2
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 8.9e-298 1026.9 911 61.0
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.2e-297 1026.5 890 62.2
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.2e-297 1026.5 880 61.7
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 2.0e-297 1025.8 898 61.4
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 3.2e-295 1018.5 896 61.6
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 6.2e-291 1004.2 906 60.6
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 2.4e-290 1002.3 898 57.7
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.5e-289 999.6 857 62.5
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 1.9e-287 992.6 695 71.8
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 3.9e-285 984.9 804 63.9
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 5.1e-285 984.6 965 54.0
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 3.3e-284 981.9 881 60.0
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 5.6e-284 981.1 897 57.9
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 7.3e-284 980.7 881 59.1
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 2.1e-283 979.2 889 59.4
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 4.6e-278 961.4 623 76.6
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 1.0e-277 960.3 933 56.7
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 9.9e-273 943.7 887 56.1
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 7.9e-270 934.1 588 77.0
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 4.3e-268 928.3 750 62.8
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 9.6e-268 927.2 965 53.0
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.6e-267 926.4 904 55.8
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 5.8e-265 917.9 890 55.4
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 3.0e-261 905.6 873 57.6
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 9.0e-258 894.0 921 53.3
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.5e-255 885.9 919 52.9
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.2e-254 883.6 847 55.1
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 2.6e-249 865.9 753 58.2
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.7e-246 855.9 925 52.6
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.8e-243 845.9 904 51.3
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 7.4e-236 821.2 836 52.6
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 2.8e-235 819.3 876 51.4
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 4.1e-234 815.5 818 52.4
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.2e-230 803.9 867 51.8
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 3.7e-227 792.3 837 51.4
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 5.9e-225 785.0 641 61.0
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 7.5e-220 768.1 823 52.1
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 2.9e-208 729.6 572 61.5
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 6.8e-205 718.4 846 44.9
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.6e-204 716.5 872 45.3
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 2.9e-203 713.0 593 64.8
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.6e-198 697.2 626 54.3
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 4.9e-187 659.1 624 58.0
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 1.9e-183 647.1 651 55.9
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 6.2e-182 642.1 647 50.7
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 4.9e-171 605.9 578 55.9
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 1.2e-161 574.7 885 39.9
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 8.5e-139 498.8 536 47.0
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 1.0e-120 438.7 619 38.6
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.0e-120 436.8 457 53.4
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 2.2e-118 431.0 522 49.0
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.7e-107 394.8 499 45.3
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 2.8e-102 377.5 401 54.9
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 3.6e-97 360.5 485 43.9
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 2.0e-95 354.8 264 64.8
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 1.8e-93 348.2 698 31.8
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 6.2e-81 306.6 225 64.4
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 8.1e-81 306.2 264 58.7
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 5.4e-69 266.9 175 70.9
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 6.6e-67 260.0 520 30.6
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 3.5e-60 237.7 496 30.2
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 8.1e-57 226.5 157 70.7
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 1.1e-34 152.9 197 46.7
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 9.4e-21 106.7 80 61.2
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.8e-19 102.4 74 67.6
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 6.7e-19 100.5 65 75.4
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 4.4e-18 97.8 226 29.6
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 4.1e-16 91.3 123 47.2
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 2.7e-12 78.6 74 58.1
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 2.0e-07 62.4 271 24.0


User provided reference genes

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