Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-98 363.2 178 100.0
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.3e-82 308.1 158 94.9
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.9e-52 207.6 105 95.2
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.9e-52 207.6 105 95.2
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.9e-52 207.6 105 95.2
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.9e-52 207.6 105 95.2
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.6e-28 130.2 105 64.8
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 1.1e-24 117.5 105 60.0
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 4.1e-24 115.5 103 60.2
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.5e-23 113.6 93 62.4
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 2.6e-23 112.8 99 58.6
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 7.7e-23 111.3 120 53.3
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 7.7e-23 111.3 103 57.3
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.0e-22 110.9 99 58.6
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.3e-22 110.5 112 52.7
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.3e-22 110.5 103 56.3
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.3e-22 110.5 99 58.6
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.3e-22 110.5 99 58.6
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.7e-22 110.2 110 52.7
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 2.9e-22 109.4 105 56.2
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 5.0e-22 108.6 104 56.7
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 6.5e-22 108.2 99 58.6
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 1.1e-21 107.5 105 54.3
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.9e-21 106.7 98 58.2
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 1.9e-21 106.7 110 50.9
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 2.5e-21 106.3 118 51.7
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 3.2e-21 105.9 93 59.1
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 3.2e-21 105.9 93 59.1
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 4.2e-21 105.5 93 57.0
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.2e-21 105.5 93 57.0
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.2e-21 105.5 93 57.0
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 4.2e-21 105.5 93 57.0
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.5e-21 105.1 93 55.9
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 5.5e-21 105.1 93 58.1
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 7.2e-21 104.8 106 53.8
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 7.2e-21 104.8 93 58.1
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 7.2e-21 104.8 91 59.3
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 7.2e-21 104.8 110 50.0
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 7.2e-21 104.8 122 50.8
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 7.2e-21 104.8 93 57.0
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 9.4e-21 104.4 91 58.2
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 9.4e-21 104.4 106 53.8
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.2e-20 104.0 111 51.4
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.2e-20 104.0 115 53.0
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 1.2e-20 104.0 101 54.5
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.6e-20 103.6 93 57.0
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.6e-20 103.6 93 54.8
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 1.6e-20 103.6 119 47.9
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 1.6e-20 103.6 122 50.0
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 1.6e-20 103.6 98 56.1
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.6e-20 103.6 114 51.8
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 2.1e-20 103.2 114 51.8
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.1e-20 103.2 106 52.8
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 2.1e-20 103.2 113 49.6
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.1e-20 103.2 118 51.7
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.7e-20 102.8 111 50.5
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 2.7e-20 102.8 93 57.0
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 2.7e-20 102.8 93 57.0
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 2.7e-20 102.8 93 57.0
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.6e-20 102.4 83 65.1
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 3.6e-20 102.4 93 57.0
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.6e-20 102.4 93 55.9
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 3.6e-20 102.4 120 49.2
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 3.6e-20 102.4 103 54.4
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 4.7e-20 102.1 111 51.4
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 4.7e-20 102.1 111 50.5
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 6.1e-20 101.7 107 53.3
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 6.1e-20 101.7 99 53.5
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 6.1e-20 101.7 93 55.9
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 6.1e-20 101.7 106 51.9
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 6.1e-20 101.7 106 51.9
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 6.1e-20 101.7 106 51.9
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 6.1e-20 101.7 111 50.5
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 6.1e-20 101.7 93 54.8
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 6.1e-20 101.7 93 57.0
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 7.9e-20 101.3 93 55.9
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 7.9e-20 101.3 93 55.9
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 7.9e-20 101.3 93 55.9
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 7.9e-20 101.3 93 55.9
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 7.9e-20 101.3 93 55.9
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 7.9e-20 101.3 93 55.9
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 7.9e-20 101.3 93 55.9
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 7.9e-20 101.3 99 53.5
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.0e-19 100.9 102 53.9
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 1.0e-19 100.9 107 51.4
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.4e-19 100.5 93 55.9
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.8e-19 100.1 127 46.5
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.8e-19 100.1 130 46.9
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.8e-19 100.1 103 51.5
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 2.3e-19 99.8 91 57.1
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.3e-19 99.8 93 55.9
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 2.3e-19 99.8 93 55.9
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.3e-19 99.8 104 53.8
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 2.3e-19 99.8 93 57.0
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 3.0e-19 99.4 99 51.5
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 3.9e-19 99.0 93 54.8
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 3.9e-19 99.0 111 48.6
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 5.1e-19 98.6 103 51.5
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 5.1e-19 98.6 93 52.7
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 5.1e-19 98.6 93 53.8
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 5.1e-19 98.6 99 52.5
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 5.1e-19 98.6 99 52.5
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 5.1e-19 98.6 93 55.9
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 6.7e-19 98.2 99 51.5
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 6.7e-19 98.2 110 44.5
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 8.8e-19 97.8 99 51.5
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 1.5e-18 97.1 93 53.8
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 1.5e-18 97.1 122 46.7
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.0e-18 96.7 97 52.6
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 2.0e-18 96.7 103 51.5
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.6e-18 96.3 97 51.5
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 2.6e-18 96.3 91 56.0
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 2.6e-18 96.3 103 49.5
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 2.6e-18 96.3 106 49.1
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 4.4e-18 95.5 103 45.6
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 4.4e-18 95.5 93 51.6
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 7.4e-18 94.7 93 52.7
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 9.7e-18 94.4 103 50.5
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 9.7e-18 94.4 93 52.7
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.7e-17 93.6 93 50.5
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 2.2e-17 93.2 93 51.6
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.8e-16 90.1 98 46.9
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 6.9e-16 88.2 93 50.5
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 3.8e-14 82.4 93 45.2
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 8.5e-14 81.3 113 43.4
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.4e-13 80.5 109 43.1
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 4.2e-13 79.0 93 44.1
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 6.1e-12 75.1 113 43.4
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 7.4e-10 68.2 89 34.8
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.3e-09 67.4 38 73.7
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.7e-09 67.0 38 73.7
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 1.7e-09 67.0 70 55.7
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.8e-09 66.2 40 70.0
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.4e-08 63.9 38 65.8
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.9e-06 56.2 38 57.9


User provided reference genes

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