Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.4e-133 478.0 252 100.0
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.9e-124 448.0 250 94.4
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.1e-120 436.8 249 92.4
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 6.2e-103 377.9 256 80.9
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.4e-86 323.6 250 69.2
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 2.4e-78 296.2 250 62.4
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.0e-77 293.1 250 62.8
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 7.7e-77 291.2 250 61.6
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 5.5e-75 285.0 250 60.0
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.2e-74 283.9 250 61.2
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.0e-73 279.3 250 59.6
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 1.1e-72 277.3 250 56.8
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.5e-72 276.9 250 59.6
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.3e-71 273.9 248 59.3
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.8e-71 272.7 250 59.2
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.1e-70 270.8 250 58.8
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.4e-70 270.4 250 57.2
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 9.1e-70 267.7 286 52.8
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 9.1e-70 267.7 245 57.6
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 2.6e-69 266.2 250 58.8
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.4e-69 265.8 248 56.5
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 1.3e-68 263.8 249 56.2
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 6.5e-68 261.5 250 55.6
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 7.9e-66 254.6 245 54.3
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.0e-65 254.2 250 56.0
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.8e-65 253.4 250 55.6
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.8e-65 253.4 250 55.6
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.8e-65 253.4 250 55.2
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.3e-65 253.1 248 54.0
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.3e-65 253.1 250 56.4
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 6.7e-65 251.5 250 54.8
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 6.7e-65 251.5 250 53.6
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 8.8e-65 251.1 250 52.0
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 2.6e-64 249.6 250 52.8
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.6e-64 249.6 250 55.6
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 2.6e-64 249.6 250 56.8
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 4.4e-64 248.8 249 54.2
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 5.7e-64 248.4 250 52.0
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 7.4e-64 248.1 250 51.6
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 9.7e-64 247.7 250 54.8
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.4e-62 243.0 250 54.4
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 3.1e-62 242.7 245 51.4
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 4.1e-62 242.3 250 51.6
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 4.1e-62 242.3 250 51.6
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 5.3e-62 241.9 250 52.0
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 5.3e-62 241.9 250 51.6
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.2e-61 240.7 250 53.2
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.2e-61 240.7 268 50.0
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.0e-61 240.0 250 50.8
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.6e-61 239.6 250 52.8
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.6e-61 239.6 248 49.6
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.5e-61 238.8 250 53.2
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 5.9e-61 238.4 248 52.4
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 7.7e-61 238.0 245 52.2
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 7.7e-61 238.0 250 51.2
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.3e-60 237.3 250 53.2
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.3e-60 237.3 249 48.6
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 3.8e-60 235.7 241 51.9
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 8.5e-60 234.6 245 49.8
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 8.5e-60 234.6 248 51.6
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.1e-59 234.2 248 51.6
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.4e-59 233.8 248 51.6
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.4e-59 233.8 248 51.6
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.4e-59 233.8 248 51.6
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.4e-59 233.8 249 49.4
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 4.2e-59 232.3 249 49.0
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 7.2e-59 231.5 249 48.2
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.2e-58 230.7 249 49.0
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.6e-58 230.3 251 49.4
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 2.7e-58 229.6 235 51.5
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 6.1e-58 228.4 249 48.6
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.4e-57 227.3 243 50.6
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.3e-57 226.5 249 48.2
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 1.5e-56 223.8 261 47.9
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 3.3e-56 222.6 260 47.3
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 3.7e-55 219.2 247 49.4
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.1e-54 217.6 250 48.4
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.1e-54 217.6 241 48.5
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.4e-54 217.2 243 46.9
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.8e-54 216.9 267 45.7
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 3.1e-54 216.1 233 50.6
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 4.1e-54 215.7 249 45.8
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 7.0e-54 214.9 245 45.7
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.6e-53 213.8 250 46.0
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.6e-53 213.8 250 46.0
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 3.5e-53 212.6 248 44.8
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 4.5e-53 212.2 247 45.7
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.3e-52 210.7 250 46.4
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 1.7e-52 210.3 247 45.3
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 3.8e-52 209.1 317 44.2
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 5.0e-52 208.8 248 45.2
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 6.5e-52 208.4 249 45.0
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.5e-51 207.2 243 44.4
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.5e-51 205.3 250 44.8
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 5.5e-51 205.3 239 43.9
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.1e-50 203.4 248 43.5
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 2.1e-50 203.4 238 45.4
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.0e-49 199.5 250 47.2
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 5.2e-49 198.7 248 43.5
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 2.6e-48 196.4 245 43.7
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 2.2e-47 193.4 231 45.0
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.7e-47 192.6 249 46.6
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 5.3e-46 188.7 245 41.6
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.0e-44 184.5 144 63.9
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 2.9e-44 183.0 149 62.4
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.9e-43 180.3 248 38.7
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 5.5e-43 178.7 245 40.4
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 5.5e-43 178.7 248 38.7
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 7.2e-43 178.3 150 57.3
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.1e-42 176.8 282 39.4
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 1.0e-41 174.5 245 38.4
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 1.0e-41 174.5 245 38.4
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.0e-41 172.6 135 63.0
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 5.2e-41 172.2 140 60.0
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 8.3e-39 164.9 135 63.7
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 9.1e-38 161.4 248 36.7
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 4.5e-37 159.1 241 36.9
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 4.5e-37 159.1 248 35.5
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 1.3e-36 157.5 248 35.9
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 3.8e-36 156.0 244 38.9
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 3.8e-36 156.0 248 35.9
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 8.6e-36 154.8 248 35.5
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 5.5e-35 152.1 135 54.1
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 7.2e-35 151.8 139 57.6
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 2.1e-34 150.2 248 34.7
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 5.2e-33 145.6 248 33.9
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 8.9e-33 144.8 238 33.6
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 2.6e-32 143.3 248 33.1
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 2.6e-32 143.3 248 33.1
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 3.7e-31 139.4 161 42.2
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.9e-31 139.0 103 69.9
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.2e-30 136.3 152 51.3
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 9.2e-30 134.8 157 49.0
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.2e-29 134.4 152 51.3
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 6.8e-25 118.6 139 48.2
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.0e-21 107.1 135 40.0
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 8.6e-20 101.7 135 38.5
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.2e-18 97.8 163 36.2
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.8e-18 96.7 104 51.0
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.7e-18 95.9 112 47.3
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 6.8e-17 92.0 129 38.0
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 8.9e-17 91.7 123 40.7
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 1.2e-16 91.3 130 39.2
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 1.3e-15 87.8 162 33.3
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 4.9e-15 85.9 213 32.4
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 4.6e-13 79.3 73 54.8
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.5e-11 73.6 53 64.2
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.3e-11 72.0 83 47.0
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 9.5e-11 71.6 93 45.2
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.1e-09 68.2 75 44.0
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.1e-09 66.6 111 34.2
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 8.9e-09 65.1 65 53.8
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 8.9e-09 65.1 65 53.8
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 2.6e-08 63.5 84 38.1
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 4.4e-08 62.8 69 47.8
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.2e-07 60.5 53 52.8
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.9e-07 60.1 68 48.5
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.4e-07 58.9 113 31.0


User provided reference genes

Program Settings