Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 1.0e-146 523.5 279 100.0
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 3.5e-139 498.4 280 95.0
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 6.2e-128 461.1 279 86.4
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 7.4e-105 384.4 279 73.8
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 2.5e-97 359.4 279 69.5
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 3.9e-90 335.5 281 65.8
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 1.1e-89 334.0 287 63.8
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 4.3e-89 332.0 288 63.5
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 4.5e-86 322.0 286 61.9
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 2.9e-85 319.3 285 62.5
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 1.1e-84 317.4 280 62.9
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 2.5e-84 316.2 279 62.0
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 7.2e-84 314.7 279 61.3
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 7.9e-83 311.2 283 62.5
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 1.5e-81 307.0 287 59.2
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 3.3e-81 305.8 283 61.5
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 1.6e-80 303.5 275 60.7
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 3.7e-80 302.4 279 59.5
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 3.7e-80 302.4 279 59.5
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 1.1e-79 300.8 279 59.1
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 4.1e-79 298.9 292 58.6
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 6.9e-79 298.1 281 60.9
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 1.5e-78 297.0 282 59.2
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 1.5e-78 297.0 292 58.2
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 1.5e-78 297.0 286 59.4
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 7.7e-78 294.7 297 58.9
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 7.7e-78 294.7 277 59.6
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 1.0e-77 294.3 280 58.2
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 1.3e-77 293.9 280 60.4
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 2.2e-77 293.1 285 59.3
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.9e-77 292.7 295 59.0
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 3.8e-77 292.4 280 58.9
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 5.0e-77 292.0 295 60.3
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 8.5e-77 291.2 291 58.4
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 8.5e-77 291.2 291 58.4
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 8.5e-77 291.2 281 61.9
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 3.2e-76 289.3 292 57.5
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.1e-75 286.6 307 56.7
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 1.0e-74 284.3 280 58.6
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 1.4e-74 283.9 280 57.9
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 8.8e-74 281.2 283 56.9
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 2.6e-73 279.6 284 57.7
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 3.3e-73 279.3 284 57.4
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 3.3e-73 279.3 287 57.1
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 4.4e-73 278.9 284 57.7
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 1.3e-72 277.3 296 53.7
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 1.7e-72 276.9 285 56.5
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 2.2e-72 276.6 352 47.7
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 2.8e-72 276.2 276 58.0
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 3.7e-72 275.8 285 55.4
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.7e-72 275.8 322 52.8
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 6.3e-72 275.0 281 57.7
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 6.3e-72 275.0 280 56.4
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 8.2e-72 274.6 279 54.8
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 1.1e-71 274.2 280 58.2
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 1.4e-71 273.9 284 54.6
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 1.8e-71 273.5 291 55.3
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 5.9e-70 268.5 281 55.5
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 1.7e-69 266.9 303 53.5
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 2.2e-69 266.5 299 55.2
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 5.0e-69 265.4 282 54.3
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 6.5e-69 265.0 286 55.9
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 6.5e-69 265.0 287 54.7
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 1.4e-68 263.8 286 53.5
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 3.2e-68 262.7 303 54.8
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 3.2e-68 262.7 288 55.9
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 7.2e-68 261.5 292 54.5
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 1.2e-67 260.8 274 55.1
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 6.1e-67 258.5 360 45.6
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 1.8e-66 256.9 277 53.1
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 2.3e-66 256.5 287 53.3
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 3.0e-66 256.1 277 53.1
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 5.2e-66 255.4 277 53.8
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 6.7e-66 255.0 278 51.8
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 8.8e-66 254.6 279 52.7
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 2.0e-65 253.4 277 53.1
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 2.6e-65 253.1 283 54.1
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 3.3e-65 252.7 277 53.8
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 3.3e-65 252.7 237 59.5
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 5.7e-65 251.9 326 48.8
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 7.4e-65 251.5 285 56.5
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 7.4e-65 251.5 303 51.5
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 4.8e-64 248.8 285 52.3
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 6.3e-64 248.4 286 53.1
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 1.4e-63 247.3 282 52.5
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 5.9e-62 241.9 288 50.3
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 2.2e-61 240.0 290 51.4
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 5.0e-61 238.8 281 54.4
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 6.5e-61 238.4 280 50.7
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 3.2e-60 236.1 296 48.6
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 3.2e-60 236.1 277 52.3
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 4.2e-60 235.7 277 50.9
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 5.5e-60 235.3 295 50.8
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 1.2e-59 234.2 275 50.9
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 8.0e-59 231.5 260 51.9
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 2.3e-58 229.9 290 49.0
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 5.2e-58 228.8 276 51.1
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 6.7e-58 228.4 260 51.5
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 9.7e-57 224.6 279 50.2
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 2.8e-56 223.0 278 50.0
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 2.8e-56 223.0 278 50.0
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 2.8e-56 223.0 278 50.0
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 1.1e-55 221.1 276 47.5
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 1.4e-55 220.7 276 50.0
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 1.4e-55 220.7 276 49.6
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 1.4e-55 220.7 276 49.6
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 4.1e-55 219.2 276 50.0
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 4.1e-55 219.2 286 48.6
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 5.3e-55 218.8 279 50.2
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 7.0e-55 218.4 286 48.3
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 1.2e-54 217.6 275 47.6
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 1.2e-54 217.6 283 46.6
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 3.5e-54 216.1 232 53.0
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 1.6e-51 207.2 276 46.7
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 8.8e-50 201.4 192 60.9
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 4.8e-48 195.7 479 33.6
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 5.4e-47 192.2 274 47.8
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 2.9e-45 186.4 296 43.9
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 1.9e-44 183.7 510 31.6
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 2.8e-43 179.9 170 58.2
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 1.0e-42 177.9 289 42.9
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 3.7e-40 169.5 284 43.0
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 1.8e-39 167.2 283 42.4
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 3.8e-37 159.5 174 55.2
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 4.3e-36 156.0 144 62.5
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 1.2e-35 154.5 275 40.0
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 1.2e-35 154.5 290 39.7
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 2.1e-35 153.7 228 44.3
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 1.0e-34 151.4 124 66.1
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 1.8e-34 150.6 176 50.6
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 2.0e-33 147.1 175 49.7
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 4.9e-32 142.5 177 48.0
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 1.6e-30 137.5 226 40.7
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 5.0e-29 132.5 280 34.3
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 3.3e-28 129.8 220 42.3
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 1.1e-26 124.8 114 62.3
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 1.4e-23 114.4 110 56.4
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 9.2e-23 111.7 147 44.9
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 9.2e-23 111.7 175 44.0
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 2.7e-22 110.2 273 33.3
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 5.6e-20 102.4 270 34.1
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 6.2e-19 99.0 102 56.9
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 1.9e-15 87.4 162 35.8
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 3.2e-15 86.7 237 31.2
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.5e-14 83.2 155 37.4
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 5.1e-13 79.3 157 36.9
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 4.3e-12 76.3 163 36.2
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.3e-12 76.3 72 52.8
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.8e-10 70.9 152 31.6
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 5.2e-10 69.3 153 34.0
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 5.2e-10 69.3 77 44.2
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 6.8e-10 68.9 101 41.6
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 8.9e-10 68.6 171 32.7
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.5e-09 67.8 76 46.1
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.4e-09 66.2 107 38.3
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.2e-08 63.9 155 32.3
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.8e-08 63.2 77 41.6
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 6.4e-08 62.4 162 27.8
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 1.4e-07 61.2 157 31.2
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 2.4e-07 60.5 174 29.3
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 5.4e-07 59.3 80 38.8
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 5.4e-07 59.3 80 45.0
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 7.1e-07 58.9 70 44.3
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 7.1e-07 58.9 129 37.2
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 7.1e-07 58.9 153 30.7
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 9.2e-07 58.5 184 29.9
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 9.2e-07 58.5 77 45.5
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 9.2e-07 58.5 152 27.0
Sabra10G0105200 Salix brachista HOM05D004891 ORTHO05D005997 1.6e-06 57.8 42 73.8
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 1.6e-06 57.8 42 73.8
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 2.1e-06 57.4 132 33.3
Eucgr.D02345 Eucalyptus grandis HOM05D008545 ORTHO05D010341 2.1e-06 57.4 110 31.8
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 2.7e-06 57.0 77 39.0
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.7e-06 57.0 80 41.2
GSVIVG01027047001 Vitis vinifera HOM05D008545 ORTHO05D010341 2.7e-06 57.0 154 26.0
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 3.5e-06 56.6 79 41.8
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 3.5e-06 56.6 152 32.9
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 3.5e-06 56.6 196 28.1
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 3.5e-06 56.6 140 34.3
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 3.5e-06 56.6 95 37.9
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 4.6e-06 56.2 184 28.3
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 6.0e-06 55.8 162 30.2
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 6.0e-06 55.8 268 24.6
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 6.0e-06 55.8 119 35.3


User provided reference genes

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