Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 3.0e-180 635.2 345 100.0
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 9.6e-155 550.4 328 92.4
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 4.8e-138 495.0 350 75.1
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 1.9e-118 429.9 349 67.6
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 2.9e-79 299.7 355 50.1
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 9.5e-78 294.7 349 50.1
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 1.2e-77 294.3 359 49.9
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 2.1e-77 293.5 344 50.9
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 3.6e-77 292.7 342 51.5
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 6.8e-76 288.5 347 50.4
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 2.4e-73 280.0 343 49.0
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.1e-73 279.3 342 48.5
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.6e-72 277.3 350 48.3
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.0e-72 276.9 344 48.5
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 7.8e-72 275.0 346 47.7
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 1.3e-71 274.2 350 46.3
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.3e-71 274.2 355 48.2
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 3.0e-71 273.1 355 47.9
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 6.6e-71 271.9 348 44.3
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 6.6e-71 271.9 350 49.4
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 8.6e-71 271.6 356 47.5
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 1.1e-70 271.2 342 43.9
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.3e-70 269.2 350 48.3
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 9.5e-70 268.1 349 46.1
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.8e-69 266.5 358 46.1
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 1.4e-68 264.2 357 47.1
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 2.3e-68 263.5 351 44.2
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 2.3e-68 263.5 350 44.3
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.5e-67 260.8 345 45.5
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 3.4e-67 259.6 344 45.1
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 4.4e-67 259.2 346 44.5
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 9.8e-67 258.1 352 45.7
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 1.7e-66 257.3 344 47.1
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 7.0e-65 251.9 347 44.7
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 1.2e-64 251.1 349 44.1
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 3.5e-64 249.6 340 42.6
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 1.0e-63 248.1 348 45.4
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 3.9e-63 246.1 349 41.5
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 6.6e-63 245.4 347 43.5
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 6.6e-63 245.4 347 43.2
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 1.5e-62 244.2 353 43.1
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 1.9e-62 243.8 327 46.2
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.3e-62 243.0 352 43.5
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 9.5e-62 241.5 346 41.9
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 2.8e-61 240.0 348 43.7
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 3.6e-61 239.6 399 42.4
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 4.7e-61 239.2 347 43.5
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 1.1e-60 238.0 347 43.5
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 6.8e-60 235.3 352 41.5
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 1.2e-59 234.6 342 39.8
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 1.5e-59 234.2 348 42.2
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 2.6e-59 233.4 338 42.3
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 3.4e-59 233.0 342 43.0
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 3.4e-59 233.0 355 41.1
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 1.4e-57 227.6 344 41.3
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 2.4e-57 226.9 340 41.5
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 7.1e-57 225.3 346 40.8
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 7.1e-57 225.3 344 41.9
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 7.8e-56 221.9 384 40.4
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 7.8e-56 221.9 343 41.7
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 3.0e-55 219.9 345 45.2
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 6.6e-55 218.8 331 40.5
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 1.9e-54 217.2 339 42.8
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 7.3e-54 215.3 337 41.8
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 1.2e-53 214.5 314 43.0
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 1.6e-53 214.2 365 37.3
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 2.8e-53 213.4 385 39.5
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 4.7e-53 212.6 340 41.2
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 6.2e-53 212.2 340 40.3
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 6.8e-52 208.8 347 40.3
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 1.5e-51 207.6 353 39.9
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 2.2e-50 203.8 353 39.4
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 2.2e-50 203.8 354 38.7
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 3.8e-50 203.0 348 41.4
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 4.9e-50 202.6 346 39.6
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 1.4e-49 201.1 352 38.9
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 3.2e-49 199.9 338 38.5
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 3.2e-49 199.9 344 39.0
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 3.2e-49 199.9 455 33.4
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 2.1e-48 197.2 355 40.8
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 3.5e-48 196.4 344 39.2
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 1.3e-47 194.5 355 39.2
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 3.0e-47 193.4 347 40.1
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 8.6e-47 191.8 348 38.8
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 8.6e-47 191.8 347 40.1
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 5.6e-46 189.1 340 38.5
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 9.6e-46 188.3 260 45.4
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 9.6e-46 188.3 308 40.3
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.2e-45 188.0 314 39.5
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 2.1e-45 187.2 342 38.9
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 2.1e-45 187.2 356 38.8
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 2.8e-45 186.8 343 38.5
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 8.1e-45 185.3 280 42.5
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.4e-44 183.7 329 37.4
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 3.8e-42 176.4 344 36.0
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 1.1e-41 174.9 285 40.0
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 4.2e-41 172.9 342 38.0
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 1.2e-40 171.4 354 35.3
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 6.0e-40 169.1 187 52.9
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 1.0e-39 168.3 361 33.0
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.3e-38 162.9 207 46.9
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 9.6e-38 161.8 307 36.8
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 3.6e-37 159.8 313 37.1
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 4.8e-37 159.5 272 39.3
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 1.1e-36 158.3 342 34.2
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 5.8e-35 152.5 263 36.5
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 1.7e-34 151.0 305 35.7
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 3.8e-34 149.8 346 33.8
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 6.4e-34 149.1 319 36.7
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 2.4e-33 147.1 188 44.1
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 4.2e-33 146.4 214 43.5
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 7.1e-33 145.6 347 34.9
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 7.1e-33 145.6 282 38.7
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 8.1e-29 132.1 266 36.8
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 8.1e-29 132.1 266 36.8
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 8.1e-29 132.1 266 36.8
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 1.7e-26 124.4 255 36.5
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 2.9e-26 123.6 194 38.1
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 1.9e-25 120.9 222 37.8
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 6.0e-24 115.9 263 34.2
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 2.5e-22 110.5 403 27.0
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 4.3e-22 109.8 286 31.5
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 1.3e-21 108.2 121 51.2
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 2.9e-18 97.1 390 25.4
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 8.4e-18 95.5 220 34.1
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 6.0e-16 89.4 118 44.9
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 6.0e-16 89.4 90 54.4
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 1.8e-15 87.8 174 36.8
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 2.5e-14 84.0 112 43.8
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 5.7e-14 82.8 100 54.0
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 2.0e-11 74.3 201 30.3
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.0e-10 72.0 100 38.0
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 2.9e-10 70.5 61 57.4
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.6e-08 64.7 61 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 2.7e-08 63.9 179 25.1


User provided reference genes

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