Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 1.1e-209 733.0 365 100.0
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.9e-206 722.2 365 98.1
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 2.9e-202 708.4 365 95.6
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 4.5e-195 684.5 365 92.1
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 6.3e-165 584.3 365 75.3
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 7.5e-158 560.8 370 73.8
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 5.0e-154 548.1 365 70.7
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 2.5e-153 545.8 365 73.2
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 4.3e-153 545.0 365 69.9
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 2.8e-152 542.3 373 70.0
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 2.6e-150 535.8 368 69.3
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 7.5e-150 534.3 370 70.8
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.2e-149 532.7 368 68.8
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 4.9e-149 531.6 365 68.8
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 3.2e-148 528.9 367 68.7
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 5.4e-148 528.1 365 69.0
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 9.2e-148 527.3 369 66.9
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 4.6e-147 525.0 366 69.1
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 7.8e-147 524.2 368 69.6
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 6.6e-146 521.2 372 67.5
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 1.1e-145 520.4 370 68.6
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 1.1e-145 520.4 365 67.4
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 1.9e-145 519.6 369 68.3
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 3.3e-145 518.8 369 69.1
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 1.2e-144 516.9 365 67.9
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 1.2e-144 516.9 371 67.7
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 4.7e-144 515.0 367 69.5
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 8.0e-144 514.2 358 69.0
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 4.0e-143 511.9 370 67.6
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 4.0e-143 511.9 378 68.0
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 5.2e-143 511.5 365 68.8
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 2.0e-142 509.6 371 67.1
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 6.4e-141 504.6 369 66.4
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.4e-140 503.4 368 69.6
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 3.2e-140 502.3 368 69.3
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 4.1e-140 501.9 368 66.0
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 7.1e-140 501.1 368 69.0
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 9.2e-140 500.7 377 64.7
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.2e-140 500.7 368 69.3
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.2e-140 500.7 368 69.3
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.6e-139 498.4 373 65.7
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.8e-139 497.7 373 65.4
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 3.0e-138 495.7 375 65.9
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 3.9e-138 495.4 365 66.8
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 5.1e-138 495.0 377 64.7
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 6.6e-138 494.6 371 65.5
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 1.9e-137 493.0 365 64.4
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 1.9e-137 493.0 373 63.5
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.6e-137 491.5 373 64.9
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 1.2e-136 490.3 371 63.9
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.6e-136 490.0 383 62.4
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.1e-136 489.6 368 68.2
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 2.1e-136 489.6 370 64.1
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 4.0e-135 485.3 365 64.1
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 8.9e-135 484.2 372 63.2
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.7e-133 479.9 372 62.6
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 2.2e-133 479.6 373 62.5
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 3.7e-133 478.8 371 62.3
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 6.4e-133 478.0 374 63.6
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 3.2e-132 475.7 371 64.2
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 3.2e-132 475.7 371 61.5
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 3.9e-130 468.8 367 61.6
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 3.9e-130 468.8 367 61.6
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 8.6e-130 467.6 365 64.7
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.1e-129 467.2 367 61.3
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 1.5e-129 466.8 368 61.4
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.9e-129 466.5 372 60.8
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.3e-129 465.7 374 62.6
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.8e-128 462.6 374 62.0
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 4.7e-128 461.8 367 61.0
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 8.1e-128 461.1 374 62.3
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.1e-127 460.7 371 60.1
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 3.1e-127 459.1 367 63.2
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 8.9e-127 457.6 366 63.7
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 4.9e-125 451.8 373 59.8
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 5.4e-124 448.4 373 62.2
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 2.1e-123 446.4 370 62.2
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 4.6e-123 445.3 350 60.3
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 4.6e-123 445.3 374 60.4
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.7e-122 443.4 379 60.7
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.7e-122 443.4 371 62.3
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.0e-122 442.6 376 60.9
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 3.0e-122 442.6 371 62.0
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 5.1e-122 441.8 374 59.9
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 1.9e-121 439.9 366 59.3
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 7.3e-121 438.0 373 60.9
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.6e-120 436.8 375 60.8
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 2.1e-120 436.4 369 61.0
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 8.1e-120 434.5 368 60.1
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 4.0e-119 432.2 353 58.6
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.0e-119 432.2 367 60.5
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 6.9e-119 431.4 383 59.0
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 9.3e-116 421.0 365 59.7
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 4.6e-115 418.7 370 58.6
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.0e-114 417.5 372 55.6
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 3.0e-114 416.0 366 58.5
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.9e-114 415.6 362 58.3
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.4e-111 407.1 372 55.9
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 1.8e-111 406.8 383 55.1
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 6.9e-111 404.8 356 57.9
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-110 404.1 359 55.2
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.8e-106 390.2 370 54.3
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 5.8e-102 375.2 366 51.9
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.8e-98 363.6 336 55.1
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.3e-98 363.2 336 55.1
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 2.0e-94 350.1 458 43.2
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 1.1e-89 334.3 370 47.6
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 6.9e-87 325.1 370 46.2
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 4.5e-86 322.4 294 53.4
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 7.7e-86 321.6 364 45.9
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 1.1e-84 317.8 280 57.1
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 2.8e-80 303.1 376 43.6
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 4.8e-80 302.4 356 46.3
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.3e-69 267.7 343 42.3
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 3.6e-67 259.6 370 40.8
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 1.3e-64 251.1 260 50.4
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 4.8e-64 249.2 370 38.1
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 7.0e-63 245.4 230 54.8
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 5.5e-60 235.7 182 62.6
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 4.7e-59 232.6 199 56.8
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 9.8e-57 224.9 202 51.5
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 9.1e-55 218.4 173 64.2
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 4.7e-51 206.1 356 34.0
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.8e-47 194.1 284 38.7
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 1.6e-43 181.0 163 54.6
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 1.4e-39 167.9 154 51.9
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 9.2e-39 165.2 299 31.8
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 7.8e-38 162.2 132 56.8
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 5.0e-37 159.5 132 56.1
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.2e-33 148.3 132 54.5
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 1.5e-33 147.9 247 42.9
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 2.5e-28 130.6 108 61.1
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 6.2e-27 125.9 111 55.0
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.4e-26 124.8 95 55.8
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.3e-26 124.0 95 55.8
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.8e-26 122.5 95 54.7
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.4e-24 115.9 95 53.7
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.4e-23 114.0 100 52.0
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 9.2e-23 112.1 95 64.2
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 6.0e-22 109.4 286 25.2
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 4.7e-19 99.8 93 57.0
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 4.7e-19 99.8 93 57.0
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 6.2e-19 99.4 108 55.6
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.3e-16 91.7 72 52.8
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.6e-14 83.2 79 57.0
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.3e-13 80.9 65 61.5
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 6.6e-13 79.3 45 86.7
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 1.1e-12 78.6 77 49.4
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.2e-11 75.1 59 61.0
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 3.1e-10 70.5 58 58.6


User provided reference genes

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