Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.3e-134 483.0 244 100.0
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.1e-124 449.1 243 91.8
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 4.5e-106 388.3 244 80.7
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 5.6e-93 344.7 236 74.6
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 7.4e-85 317.8 237 70.5
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 5.9e-82 308.1 241 65.1
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.6e-79 300.1 242 62.4
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 2.7e-79 299.3 236 63.1
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 1.0e-78 297.4 201 71.6
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 6.7e-78 294.7 244 63.9
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.1e-77 293.9 237 63.7
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.9e-77 293.1 239 63.6
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 7.4e-77 291.2 203 68.5
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.3e-76 290.4 212 66.0
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 6.3e-76 288.1 239 62.3
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.2e-74 283.9 241 59.8
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.6e-74 282.7 212 67.5
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 4.5e-74 282.0 237 62.0
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 7.7e-74 281.2 235 63.0
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 7.7e-74 281.2 225 63.6
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.0e-73 280.8 200 67.5
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 6.5e-73 278.1 237 59.1
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 8.5e-73 277.7 238 61.8
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.9e-72 276.6 185 70.8
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 3.2e-72 275.8 238 61.3
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.2e-71 273.9 241 58.9
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.2e-71 273.9 242 60.3
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.6e-71 273.5 240 59.2
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.1e-71 273.1 272 55.5
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.1e-71 273.1 241 58.5
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 6.1e-71 271.6 187 72.7
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 7.9e-71 271.2 244 59.0
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.0e-70 270.8 219 61.6
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.0e-70 270.8 241 57.3
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.4e-70 270.4 199 65.8
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.4e-70 270.4 187 72.2
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 3.9e-70 268.9 229 61.6
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 5.1e-70 268.5 244 57.8
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 8.8e-70 267.7 233 60.9
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 3.3e-69 265.8 245 60.4
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 3.3e-69 265.8 238 59.7
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.3e-69 265.8 244 58.6
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 7.4e-69 264.6 131 100.0
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 7.4e-69 264.6 227 60.8
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 7.4e-69 264.6 237 57.4
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.3e-68 263.8 243 58.8
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.3e-68 263.8 243 58.8
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.7e-68 263.5 241 60.6
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.7e-68 263.5 237 57.8
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.7e-68 263.5 223 58.3
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 2.8e-68 262.7 185 70.3
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.8e-68 262.7 231 60.6
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 4.8e-68 261.9 241 59.8
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 4.8e-68 261.9 181 71.8
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 6.3e-68 261.5 178 70.2
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.1e-67 260.8 224 57.6
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.1e-67 260.8 237 57.8
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.4e-67 260.4 180 68.9
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.8e-67 260.0 241 57.7
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.8e-67 260.0 238 56.3
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.8e-67 260.0 237 62.0
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 2.4e-67 259.6 222 58.6
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.1e-67 259.2 241 57.7
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.1e-67 259.2 241 57.7
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 3.1e-67 259.2 240 57.5
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 4.1e-67 258.8 232 58.6
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 5.3e-67 258.5 244 54.1
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 5.3e-67 258.5 237 55.3
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 7.0e-67 258.1 228 59.2
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 9.1e-67 257.7 236 59.3
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 9.1e-67 257.7 236 59.3
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.2e-66 257.3 177 68.4
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.5e-66 256.9 239 59.0
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 2.6e-66 256.1 239 59.0
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 4.5e-66 255.4 239 58.6
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 7.7e-66 254.6 242 55.4
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.7e-65 253.4 226 58.4
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.2e-65 253.1 154 78.6
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 2.2e-65 253.1 182 67.0
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 2.2e-65 253.1 238 52.9
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 2.9e-65 252.7 233 58.4
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 3.8e-65 252.3 179 68.7
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 5.0e-65 251.9 174 68.4
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 8.5e-65 251.1 179 68.2
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 8.5e-65 251.1 177 69.5
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.4e-64 250.4 186 64.0
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 3.2e-64 249.2 176 66.5
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 4.2e-64 248.8 235 57.9
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.2e-64 248.1 241 54.4
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.2e-63 247.3 242 58.3
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.6e-63 246.9 238 56.7
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 2.1e-63 246.5 270 50.4
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 2.1e-63 246.5 206 59.2
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 2.7e-63 246.1 242 57.0
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 6.1e-63 245.0 180 65.6
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.0e-62 244.2 146 80.1
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 6.7e-62 241.5 154 74.0
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 8.8e-62 241.1 228 54.4
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.1e-61 240.7 152 77.0
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.5e-61 240.4 216 58.3
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.3e-60 237.3 154 72.1
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.8e-60 236.1 231 54.5
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 3.7e-60 235.7 219 54.8
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.2e-60 234.6 228 53.1
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.1e-59 234.2 232 54.7
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 7.0e-59 231.5 148 70.3
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 9.1e-59 231.1 182 60.4
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-58 230.7 143 75.5
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.0e-58 229.9 187 62.0
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.6e-58 229.6 157 68.8
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 4.5e-58 228.8 141 76.6
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 4.5e-58 228.8 200 58.5
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 4.5e-58 228.8 175 62.9
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.7e-58 228.0 143 74.8
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.3e-57 227.3 142 74.6
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 2.2e-57 226.5 144 71.5
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 6.5e-57 224.9 166 66.3
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 8.5e-57 224.6 186 58.1
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 8.5e-57 224.6 230 51.3
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.2e-56 222.6 230 50.4
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.7e-54 214.9 195 55.9
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 9.7e-53 211.1 191 51.8
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.4e-51 207.2 155 63.9
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 3.5e-50 202.6 155 65.8
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 7.2e-48 194.9 182 55.5
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.6e-47 193.7 144 60.4
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.1e-47 193.4 138 70.3
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 6.1e-47 191.8 139 69.1
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 8.0e-47 191.4 143 62.9
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.6e-45 186.4 197 53.3
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 5.7e-45 185.3 142 58.5
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 4.1e-43 179.1 168 52.4
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 4.1e-43 179.1 142 56.3
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 5.9e-42 175.3 249 42.2
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 2.3e-41 173.3 136 62.5
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.5e-40 170.6 242 42.1
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 5.2e-38 162.2 176 49.4
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.5e-37 160.6 164 51.2
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 4.9e-36 155.6 163 53.4
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 7.0e-35 151.8 144 57.6
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.9e-34 148.7 195 42.6
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 6.4e-28 128.6 119 53.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 3.2e-27 126.3 167 46.7
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.7e-26 123.2 163 47.2
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 7.3e-24 115.2 79 65.8
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.1e-18 97.1 148 35.8
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.0e-17 94.7 141 37.6
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 2.3e-14 83.6 129 34.9
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.4e-13 79.3 157 35.0
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.1e-11 74.7 83 53.0
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.4e-11 73.6 156 30.1
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.3e-09 67.0 75 41.3
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 3.9e-09 66.2 59 54.2
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 6.6e-09 65.5 159 29.6
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.5e-08 64.3 123 30.1
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.2e-06 55.8 79 40.5


User provided reference genes

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