Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 3.1e-165 585.1 300 100.0
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.7e-163 579.3 300 99.0
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 3.2e-154 548.5 302 92.7
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 3.1e-133 478.8 301 84.1
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 6.3e-86 321.6 300 62.0
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 6.3e-86 321.6 308 61.7
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.1e-85 320.9 307 60.6
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.4e-85 320.5 313 61.0
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 2.4e-85 319.7 300 62.0
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 5.0e-83 312.0 305 59.3
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 4.2e-82 308.9 237 70.0
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 5.5e-82 308.5 301 61.5
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 5.5e-82 308.5 320 58.1
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 7.2e-82 308.1 312 59.0
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.6e-81 307.0 310 59.0
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.1e-81 306.6 310 58.4
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 2.1e-81 306.6 301 58.5
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 3.6e-81 305.8 301 58.1
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 4.7e-81 305.4 316 59.5
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 2.3e-80 303.1 237 67.5
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 3.0e-80 302.8 311 58.8
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.1e-79 300.8 308 58.1
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 2.0e-79 300.1 311 56.9
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.3e-79 299.3 296 58.1
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 2.2e-78 296.6 311 56.9
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 2.8e-78 296.2 304 58.2
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.3e-78 295.0 297 58.6
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 8.2e-78 294.7 279 61.3
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 7.0e-77 291.6 241 67.6
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.2e-76 290.8 308 56.2
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.7e-76 289.7 292 58.2
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 5.9e-76 288.5 316 57.0
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 1.0e-75 287.7 316 57.0
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 1.3e-75 287.3 309 54.7
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.7e-75 287.0 314 57.0
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.7e-75 287.0 292 57.9
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 1.1e-74 284.3 338 53.6
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.5e-74 283.9 313 55.6
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.5e-74 283.9 313 55.6
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.6e-73 280.4 270 60.7
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.6e-73 280.4 306 56.2
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.6e-73 280.4 233 66.5
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 8.0e-73 278.1 319 54.5
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.2e-71 274.2 265 60.4
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 1.2e-71 274.2 254 64.6
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 2.0e-71 273.5 314 52.9
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 2.0e-71 273.5 302 54.3
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 3.4e-71 272.7 278 57.2
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 4.4e-71 272.3 294 54.8
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 5.7e-71 271.9 307 54.7
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 7.5e-71 271.6 316 53.2
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.3e-70 270.8 226 63.3
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.7e-70 270.4 298 55.4
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.4e-69 267.3 318 51.9
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 3.5e-68 262.7 322 51.2
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 5.9e-68 261.9 309 52.8
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 5.9e-68 261.9 305 53.4
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.3e-67 260.8 235 62.1
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.2e-67 260.0 303 52.5
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 6.5e-67 258.5 287 53.7
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 1.1e-66 257.7 324 52.2
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 2.5e-66 256.5 296 54.4
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 2.5e-66 256.5 318 51.9
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 3.2e-66 256.1 226 60.6
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.6e-65 253.8 254 61.0
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 1.6e-65 253.8 304 53.9
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 2.1e-65 253.4 300 52.3
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.6e-65 252.7 300 53.3
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 6.1e-65 251.9 304 51.0
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 6.1e-65 251.9 289 52.6
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 8.0e-65 251.5 325 47.4
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.0e-64 251.1 265 58.9
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.8e-64 250.4 302 54.3
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 8.8e-64 248.1 245 57.1
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.4e-63 246.1 312 48.4
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 5.7e-63 245.4 319 47.0
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.3e-62 244.2 302 52.0
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 1.7e-62 243.8 302 51.3
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.2e-62 243.4 302 53.0
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 4.9e-62 242.3 281 54.1
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 8.3e-62 241.5 310 47.7
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 8.3e-62 241.5 246 58.9
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 1.8e-61 240.4 299 48.2
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 2.4e-61 240.0 302 50.0
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 7.0e-61 238.4 322 47.8
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.0e-59 234.6 309 48.9
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.9e-59 233.0 328 49.7
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 8.6e-59 231.5 340 47.6
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 1.1e-58 231.1 293 49.5
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 7.3e-58 228.4 278 51.1
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 9.5e-58 228.0 298 49.0
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 9.5e-58 228.0 341 44.9
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 4.7e-57 225.7 251 55.8
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 4.0e-56 222.6 184 67.4
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 2.0e-55 220.3 346 45.7
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 2.6e-55 219.9 333 45.0
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 7.5e-55 218.4 249 53.4
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.7e-54 217.2 340 44.1
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 2.2e-54 216.9 333 44.4
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 2.2e-54 216.9 232 53.9
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.9e-54 216.5 303 48.2
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 1.1e-53 214.5 278 48.9
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 1.4e-53 214.2 340 43.5
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 3.2e-53 213.0 262 51.1
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 3.2e-53 213.0 262 51.1
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 4.1e-53 212.6 260 50.8
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 5.4e-53 212.2 305 45.6
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 9.2e-53 211.5 257 50.6
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 1.6e-52 210.7 325 45.5
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 1.0e-51 208.0 271 48.7
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 3.0e-51 206.5 292 48.6
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 1.9e-50 203.8 349 43.6
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 2.5e-50 203.4 351 43.0
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 9.5e-50 201.4 340 44.1
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 9.5e-50 201.4 256 50.8
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 9.5e-50 201.4 349 43.3
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.6e-49 200.7 350 42.0
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 2.8e-49 199.9 256 50.4
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 4.7e-49 199.1 251 51.0
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 1.4e-48 197.6 236 53.0
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.0e-48 196.1 227 49.8
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.2e-47 194.5 326 43.3
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 2.0e-47 193.7 288 44.4
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 2.6e-47 193.4 293 44.7
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 7.5e-47 191.8 318 44.0
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.3e-46 191.0 342 40.6
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-46 191.0 342 40.6
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.9e-45 187.2 291 44.0
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 3.2e-45 186.4 342 40.1
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 5.4e-45 185.7 296 44.3
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 9.2e-45 184.9 343 40.2
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.6e-44 184.1 306 42.8
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 3.5e-44 183.0 322 42.9
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 6.0e-44 182.2 282 41.8
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 6.0e-44 182.2 226 48.2
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 7.8e-44 181.8 357 39.2
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 1.3e-43 181.0 329 42.6
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.5e-42 177.6 223 49.8
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.5e-42 176.8 286 44.4
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 6.2e-41 172.2 305 43.9
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 6.2e-41 172.2 346 41.3
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 2.1e-36 157.1 164 54.3
Sed0005383 Sechium edule HOM05D004418 ORTHO05D005222 3.5e-36 156.4 292 41.4
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 1.3e-35 154.5 292 39.0
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 2.3e-35 153.7 214 47.2
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 7.3e-34 148.7 296 40.2
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 2.1e-33 147.1 238 45.4
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.8e-33 146.7 160 50.6
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 9.9e-31 138.3 113 68.1
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 1.7e-30 137.5 291 38.1
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 1.7e-30 137.5 291 37.8
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 1.7e-30 137.5 110 65.5
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 4.9e-30 136.0 287 35.9
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-29 134.8 287 35.5
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 5.4e-29 132.5 258 38.0
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.2e-28 131.3 258 38.0
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 1.9e-26 124.0 285 35.4
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 3.3e-26 123.2 312 35.6
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 2.0e-23 114.0 179 44.7
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 4.9e-22 109.4 236 37.3
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 1.9e-21 107.5 172 44.8
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 3.1e-16 90.1 68 64.7
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 7.1e-13 79.0 63 69.8


User provided reference genes

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