Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 1.3e-105 386.3 189 100.0
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 2.9e-105 385.2 189 99.5
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 1.4e-102 376.3 189 96.8
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 6.3e-100 367.5 189 93.1
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 2.9e-97 358.6 189 90.5
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 3.8e-97 358.2 189 91.0
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 5.0e-97 357.8 189 91.5
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 6.5e-97 357.5 189 90.5
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 1.1e-96 356.7 189 91.5
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 1.5e-96 356.3 189 88.9
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 7.2e-96 354.0 189 91.0
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 9.4e-96 353.6 189 88.4
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 3.6e-95 351.7 189 87.3
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 6.1e-95 350.9 189 89.4
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 1.0e-94 350.1 189 87.8
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 1.0e-94 350.1 189 88.9
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 1.8e-94 349.4 188 88.8
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.8e-94 349.4 189 88.9
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.8e-94 349.4 189 87.8
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 3.0e-94 348.6 189 89.4
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 4.0e-94 348.2 192 88.0
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 5.2e-94 347.8 188 88.3
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 8.8e-94 347.1 189 87.8
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.2e-93 346.7 189 88.4
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.5e-93 346.3 189 86.2
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 1.5e-93 346.3 189 87.8
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.0e-93 345.9 189 88.4
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 2.6e-93 345.5 193 85.5
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 2.6e-93 345.5 189 87.3
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 2.6e-93 345.5 188 88.3
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 3.3e-93 345.1 189 86.8
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 5.7e-93 344.4 189 85.7
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 7.5e-93 344.0 189 87.8
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 9.7e-93 343.6 191 85.9
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 9.7e-93 343.6 189 87.8
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 9.7e-93 343.6 191 86.9
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.3e-92 343.2 189 87.8
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 2.2e-92 342.4 191 85.3
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 3.7e-92 341.7 189 86.8
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 3.7e-92 341.7 189 86.8
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 4.8e-92 341.3 189 86.8
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 1.1e-91 340.1 192 86.5
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 1.4e-91 339.7 189 86.2
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 1.4e-91 339.7 189 86.8
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 1.8e-91 339.3 194 85.6
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 1.8e-91 339.3 189 85.2
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 1.8e-91 339.3 189 84.7
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 2.4e-91 339.0 191 86.4
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 2.4e-91 339.0 189 85.7
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 2.4e-91 339.0 189 86.2
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 3.1e-91 338.6 191 85.9
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 4.1e-91 338.2 192 84.9
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 4.1e-91 338.2 189 84.7
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 7.0e-91 337.4 189 85.2
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 7.0e-91 337.4 189 83.6
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 9.1e-91 337.0 189 84.7
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 1.2e-90 336.7 192 84.9
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 2.0e-90 335.9 191 85.9
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 2.7e-90 335.5 189 89.4
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 2.7e-90 335.5 192 83.3
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 3.5e-90 335.1 186 84.9
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 4.5e-90 334.7 191 84.8
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 4.5e-90 334.7 189 84.1
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 5.9e-90 334.3 190 85.3
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.0e-89 333.6 190 81.6
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 1.3e-89 333.2 191 83.8
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 2.2e-89 332.4 189 84.1
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 2.2e-89 332.4 191 84.8
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 2.9e-89 332.0 189 83.6
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 2.9e-89 332.0 194 83.0
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 2.9e-89 332.0 191 85.3
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 3.8e-89 331.6 184 85.9
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 3.8e-89 331.6 192 82.8
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 6.5e-89 330.9 188 85.6
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.9e-88 329.3 189 82.5
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 1.9e-88 329.3 188 84.6
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 1.9e-88 329.3 190 83.2
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 2.5e-88 328.9 190 84.2
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 3.2e-88 328.6 191 83.2
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 3.2e-88 328.6 191 83.2
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 4.2e-88 328.2 191 83.2
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 5.5e-88 327.8 191 82.7
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 5.5e-88 327.8 190 83.2
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 7.2e-88 327.4 191 82.7
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 7.2e-88 327.4 189 81.5
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 9.4e-88 327.0 191 82.7
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 9.4e-88 327.0 191 82.7
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 2.1e-87 325.9 178 88.8
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 2.7e-87 325.5 191 83.2
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 3.6e-87 325.1 191 82.7
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 4.7e-87 324.7 191 82.7
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 4.7e-87 324.7 191 83.2
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 6.1e-87 324.3 191 82.2
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 8.0e-87 323.9 189 83.6
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 1.0e-86 323.6 191 82.2
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 1.0e-86 323.6 191 82.2
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 1.0e-86 323.6 194 80.4
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 1.8e-86 322.8 191 82.2
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 81.2
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 4.0e-86 321.6 191 81.7
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 2.6e-85 318.9 189 81.0
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 4.4e-85 318.2 189 79.4
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 5.7e-85 317.8 188 80.3
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 3.7e-84 315.1 192 77.6
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 2.0e-82 309.3 189 77.2
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 4.5e-82 308.1 189 77.2
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 9.2e-75 283.9 181 78.5
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 3.6e-71 271.9 158 84.2
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 3.6e-71 271.9 186 65.6
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 2.0e-69 266.2 189 67.2
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 2.2e-68 262.7 191 66.0
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 4.9e-68 261.5 156 80.8
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 3.5e-66 255.4 146 86.3
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 6.0e-66 254.6 190 64.2
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 6.6e-65 251.1 147 81.6
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.8e-62 243.0 190 62.6
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.5e-56 223.4 183 55.2
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 3.3e-56 222.2 183 55.7
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 8.1e-55 217.6 187 51.3
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 3.4e-53 212.2 154 69.5
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 7.1e-51 204.5 185 55.1
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 3.9e-49 198.7 186 52.2
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 6.6e-49 198.0 182 58.2
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 1.6e-47 193.4 181 53.0
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 7.1e-43 177.9 187 50.8
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 1.6e-42 176.8 187 51.9
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 5.8e-37 158.3 91 82.4
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 4.9e-36 155.2 94 78.7
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 1.5e-29 133.7 79 79.7
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 3.5e-26 122.5 183 36.1
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 6.2e-23 111.7 185 34.1
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 1.7e-20 103.6 50 90.0
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 6.1e-10 68.6 155 32.9
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 2.5e-08 63.2 31 87.1
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 4.8e-07 58.9 28 89.3


User provided reference genes

Program Settings