Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 2.2e-71 272.3 148 100.0
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 3.2e-67 258.5 148 95.3
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 2.2e-60 235.7 148 85.8
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 6.7e-57 224.2 148 79.7
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 8.2e-55 217.2 148 77.0
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.1e-54 216.9 148 75.7
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 2.4e-54 215.7 148 76.4
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 4.1e-54 214.9 148 77.0
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 7.0e-54 214.2 148 75.0
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-53 213.4 148 75.7
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 1.6e-53 213.0 147 76.2
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.5e-53 211.5 148 75.0
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 4.5e-53 211.5 148 75.0
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.3e-52 209.9 148 73.0
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 1.7e-52 209.5 148 74.3
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 2.2e-52 209.1 148 73.6
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 3.8e-52 208.4 148 74.3
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.1e-51 206.8 148 72.3
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 2.5e-51 205.7 148 71.6
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 3.2e-51 205.3 148 71.6
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 5.5e-51 204.5 148 71.6
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 1.6e-50 203.0 148 71.6
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 2.1e-50 202.6 148 72.3
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 2.1e-50 202.6 148 72.3
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 8.0e-50 200.7 148 70.9
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 2.3e-49 199.1 148 71.6
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 4.0e-49 198.4 148 69.6
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.2e-48 196.8 148 70.3
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.0e-48 196.1 143 73.4
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 2.0e-48 196.1 148 68.9
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 2.0e-48 196.1 149 78.5
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 9.8e-48 193.7 148 69.6
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.7e-47 193.0 144 70.8
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 1.7e-47 193.0 143 70.6
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.8e-47 192.2 144 70.1
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 6.3e-47 191.0 148 71.6
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 8.3e-47 190.7 148 68.2
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 1.4e-46 189.9 148 69.6
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 7.0e-46 187.6 148 69.6
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.2e-45 186.8 148 68.9
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 2.0e-45 186.0 152 65.8
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 2.0e-45 186.0 150 70.0
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.7e-45 185.7 148 64.9
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 4.5e-45 184.9 148 67.6
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.5e-45 184.9 143 68.5
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 4.5e-45 184.9 145 66.2
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 5.9e-45 184.5 137 72.3
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 7.7e-45 184.1 150 64.7
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.0e-44 183.7 150 67.3
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.9e-44 182.2 150 64.7
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 5.0e-44 181.4 150 66.0
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 9.5e-43 177.2 150 64.0
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 6.1e-42 174.5 143 65.0
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 6.1e-42 174.5 152 65.1
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 6.1e-42 174.5 142 66.9
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.3e-41 172.6 149 65.1
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.3e-41 172.6 149 65.1
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.0e-40 169.5 149 64.4
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 2.0e-40 169.5 140 60.0
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 4.4e-40 168.3 151 61.6
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 7.5e-40 167.5 152 63.8
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 7.5e-40 167.5 151 62.3
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 9.8e-40 167.2 150 62.0
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 1.3e-39 166.8 151 61.6
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.2e-39 166.0 148 62.2
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.8e-39 165.6 121 69.4
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 3.7e-39 165.2 148 68.2
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.8e-38 162.9 120 70.8
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.8e-38 162.9 137 61.3
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.4e-38 162.5 129 69.0
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 3.1e-38 162.2 119 69.7
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 4.1e-38 161.8 148 60.1
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 4.1e-38 161.8 155 59.4
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 7.0e-38 161.0 119 69.7
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 7.0e-38 161.0 119 69.7
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 9.2e-38 160.6 148 60.1
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 9.2e-38 160.6 148 60.8
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 1.2e-37 160.2 148 61.5
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 4.5e-37 158.3 119 68.1
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.7e-36 156.4 142 59.9
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 3.8e-36 155.2 132 62.1
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 8.6e-36 154.1 121 67.8
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.5e-35 153.3 114 71.1
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 1.9e-35 152.9 149 56.4
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 4.3e-35 151.8 114 68.4
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.2e-34 150.2 135 63.7
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 1.2e-34 150.2 148 56.8
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 2.1e-34 149.4 148 59.5
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 2.1e-34 149.4 148 56.8
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 2.1e-34 149.4 148 56.8
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.8e-34 149.1 114 67.5
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 4.7e-34 148.3 148 56.8
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 4.7e-34 148.3 148 56.1
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 4.7e-34 148.3 148 56.1
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 4.7e-34 148.3 148 56.1
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 6.1e-34 147.9 148 56.8
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 8.0e-34 147.5 150 58.0
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 8.0e-34 147.5 150 58.0
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.0e-33 147.1 150 56.0
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.0e-33 147.1 148 56.1
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.4e-33 146.7 118 66.1
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.0e-33 145.6 148 58.1
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 5.2e-33 144.8 148 54.7
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.2e-33 144.8 150 55.3
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 8.9e-33 144.1 112 67.0
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.2e-32 143.7 148 54.7
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 4.4e-32 141.7 149 57.0
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 5.8e-32 141.4 141 53.2
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 1.3e-31 140.2 111 66.7
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 1.3e-31 140.2 148 54.7
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 2.4e-30 136.0 119 61.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.4e-30 134.8 151 55.6
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 9.2e-30 134.0 151 53.6
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 7.8e-29 131.0 75 97.3
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.7e-28 129.8 149 54.4
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 5.6e-27 124.8 125 56.0
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 1.2e-24 117.1 148 41.2
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.4e-24 115.2 79 74.7
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.9e-19 99.8 102 56.9
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.9e-19 99.8 119 52.1
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 9.5e-19 97.4 102 56.9
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 6.8e-17 91.3 90 54.4
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 7.5e-16 87.8 91 53.8
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.2e-14 82.4 69 66.7
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 7.1e-14 81.3 73 64.4
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 9.2e-14 80.9 92 54.3
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 2.1e-13 79.7 59 66.1
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 3.5e-13 79.0 62 64.5
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 3.3e-11 72.4 92 51.1
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.6e-11 71.6 100 51.0
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 5.6e-11 71.6 100 51.0
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 5.6e-11 71.6 136 39.0
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 4.4e-08 62.0 134 32.8
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.4e-08 62.0 69 56.5
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 2.4e-06 56.2 90 46.7


User provided reference genes

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