Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 5.5e-65 250.8 120 100.0
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 1.1e-44 183.3 90 93.3
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 2.6e-35 152.1 88 79.5
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 1.7e-34 149.4 73 87.7
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 1.7e-34 149.4 70 91.4
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 2.2e-34 149.1 70 92.9
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 6.5e-34 147.5 77 84.4
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 6.5e-34 147.5 70 91.4
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 6.5e-34 147.5 69 94.2
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 8.5e-34 147.1 77 81.8
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 1.4e-33 146.4 70 90.0
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 2.5e-33 145.6 72 84.7
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 2.5e-33 145.6 69 89.9
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 2.5e-33 145.6 69 89.9
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 2.5e-33 145.6 77 84.4
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.5e-33 145.6 72 86.1
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.2e-33 144.8 69 88.4
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 5.5e-33 144.4 70 87.1
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.5e-33 144.4 70 87.1
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 5.5e-33 144.4 77 77.9
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 5.5e-33 144.4 69 87.0
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 5.5e-33 144.4 81 80.2
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 5.5e-33 144.4 69 89.9
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 7.2e-33 144.1 69 88.4
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 7.2e-33 144.1 70 88.6
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 7.2e-33 144.1 70 87.1
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 9.4e-33 143.7 69 87.0
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 9.4e-33 143.7 70 88.6
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 9.4e-33 143.7 70 88.6
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.2e-32 143.3 70 87.1
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 1.2e-32 143.3 70 88.6
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.6e-32 142.9 70 88.6
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 1.6e-32 142.9 68 88.2
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.6e-32 142.9 70 88.6
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 2.1e-32 142.5 70 85.7
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 2.1e-32 142.5 76 81.6
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 2.1e-32 142.5 69 88.4
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.1e-32 142.5 70 88.6
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 2.1e-32 142.5 72 83.3
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 2.7e-32 142.1 70 88.6
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 2.7e-32 142.1 81 76.5
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 3.6e-32 141.7 69 89.9
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 3.6e-32 141.7 70 87.1
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 3.6e-32 141.7 70 85.7
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 4.7e-32 141.4 70 85.7
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 6.1e-32 141.0 69 88.4
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 6.1e-32 141.0 69 88.4
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 6.1e-32 141.0 69 88.4
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 6.1e-32 141.0 70 85.7
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 6.1e-32 141.0 68 85.3
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 8.0e-32 140.6 69 88.4
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 8.0e-32 140.6 70 85.7
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 1.0e-31 140.2 70 85.7
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.0e-31 140.2 70 85.7
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.4e-31 139.8 91 71.4
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.4e-31 139.8 70 84.3
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 1.4e-31 139.8 70 85.7
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.4e-31 139.8 73 82.2
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.4e-31 139.8 70 82.9
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 1.8e-31 139.4 69 88.4
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 1.8e-31 139.4 72 84.7
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 1.8e-31 139.4 74 83.8
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.8e-31 139.4 70 87.1
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.8e-31 139.4 70 87.1
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 1.8e-31 139.4 70 85.7
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.8e-31 139.4 70 84.3
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 2.3e-31 139.0 69 87.0
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 3.0e-31 138.7 69 85.5
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 3.9e-31 138.3 72 83.3
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 3.9e-31 138.3 69 84.1
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 8.8e-31 137.1 69 85.5
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 8.8e-31 137.1 70 82.9
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.1e-30 136.7 70 82.9
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 1.1e-30 136.7 70 84.3
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 1.5e-30 136.3 70 84.3
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 2.0e-30 136.0 70 85.7
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.6e-30 135.6 78 74.4
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 3.3e-30 135.2 74 77.0
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.3e-30 135.2 70 81.4
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 5.7e-30 134.4 70 82.9
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.4e-30 134.0 70 80.0
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.3e-29 133.3 70 81.4
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.3e-29 133.3 70 81.4
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 1.3e-29 133.3 74 74.3
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.3e-29 133.3 66 83.3
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 1.7e-29 132.9 69 84.1
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.7e-29 132.9 70 82.9
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 2.8e-29 132.1 76 76.3
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 2.8e-29 132.1 71 81.7
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 2.8e-29 132.1 69 78.3
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 3.7e-29 131.7 74 78.4
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 3.7e-29 131.7 70 75.7
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 4.8e-29 131.3 70 78.6
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.8e-29 131.3 70 80.0
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 6.3e-29 131.0 70 82.9
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 8.2e-29 130.6 69 79.7
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 8.2e-29 130.6 88 61.4
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 8.2e-29 130.6 69 79.7
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 1.1e-28 130.2 68 79.4
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 1.1e-28 130.2 70 78.6
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.1e-28 130.2 70 81.4
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.4e-28 129.8 68 82.4
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.4e-28 129.8 70 81.4
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.8e-28 129.4 74 77.0
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 1.8e-28 129.4 70 81.4
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 2.4e-28 129.0 70 77.1
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 2.4e-28 129.0 67 80.6
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 4.1e-28 128.3 61 88.5
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.1e-28 128.3 65 83.1
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 5.3e-28 127.9 60 90.0
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 7.0e-28 127.5 70 77.1
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 7.0e-28 127.5 70 77.1
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 7.0e-28 127.5 70 77.1
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 9.1e-28 127.1 69 71.0
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 1.6e-27 126.3 60 88.3
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.6e-27 126.3 70 80.0
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.6e-27 126.3 59 86.4
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.6e-27 125.6 61 83.6
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 2.6e-27 125.6 65 80.0
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 3.5e-27 125.2 60 86.7
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 3.5e-27 125.2 60 86.7
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 3.5e-27 125.2 68 77.9
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 3.5e-27 125.2 70 77.1
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 4.5e-27 124.8 70 78.6
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 4.5e-27 124.8 69 73.9
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 5.9e-27 124.4 65 81.5
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 5.9e-27 124.4 70 77.1
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 5.9e-27 124.4 65 78.5
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 7.7e-27 124.0 70 75.7
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 7.7e-27 124.0 73 74.0
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 1.0e-26 123.6 70 75.7
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 1.0e-26 123.6 70 75.7
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.3e-26 123.2 69 76.8
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 1.3e-26 123.2 70 74.3
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 1.7e-26 122.9 60 85.0
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.7e-26 122.9 67 74.6
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 1.7e-26 122.9 70 77.1
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 2.2e-26 122.5 61 82.0
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 2.9e-26 122.1 70 70.0
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 3.8e-26 121.7 73 74.0
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 5.0e-26 121.3 73 69.9
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 5.0e-26 121.3 68 75.0
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 6.5e-26 120.9 59 83.1
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 1.9e-25 119.4 68 75.0
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 4.2e-25 118.2 74 68.9
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 4.2e-25 118.2 70 71.4
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 7.2e-25 117.5 67 73.1
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 7.2e-25 117.5 70 72.9
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 9.4e-25 117.1 82 64.6
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 1.6e-24 116.3 70 70.0
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 2.7e-24 115.5 69 71.0
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 6.1e-24 114.4 67 71.6
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 8.0e-24 114.0 72 65.3
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 2.3e-23 112.5 99 55.6
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 3.0e-23 112.1 57 78.9
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 8.8e-23 110.5 70 70.0
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 8.8e-23 110.5 61 70.5
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 1.2e-22 110.2 70 68.6
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 2.0e-22 109.4 70 71.4
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.3e-22 108.6 70 67.1
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 9.7e-22 107.1 58 74.1
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 1.3e-21 106.7 60 73.3
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.3e-21 106.7 67 64.2
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.7e-21 106.3 64 70.3
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.7e-21 106.3 64 70.3
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 3.1e-20 102.1 71 63.4
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 7.0e-20 100.9 68 63.2
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 1.0e-18 97.1 73 57.5
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.7e-18 96.3 49 73.5
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 3.8e-18 95.1 41 97.6
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 3.8e-18 95.1 57 63.2
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 1.5e-17 93.2 41 95.1
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 3.2e-17 92.0 42 90.5
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 4.2e-17 91.7 58 65.5
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.4e-14 81.6 58 67.2
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.4e-14 81.6 58 67.2
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.7e-13 78.6 43 76.7
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 6.3e-13 77.8 62 56.5
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 7.7e-11 70.9 70 51.4
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 3.8e-10 68.6 53 58.5
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 5.0e-10 68.2 34 67.6
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 8.6e-10 67.4 36 77.8
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 1.5e-09 66.6 70 48.6
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 2.8e-08 62.4 70 47.1
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 1.5e-06 56.6 41 65.9


User provided reference genes

Program Settings